Campylobacter coli strain VA46

Gram-negativeMicroaerophile

Kingdom

Pseudomonadati

Phylum

Campylobacterota

Class

Epsilonproteobacteria

Order

Campylobacterales

Family

Campylobacteraceae

Genus

Campylobacter

Description

Campylobacter coli strain VA46 is a Gram-negative bacterium characterized as a microaerophile, indicating its requirement for reduced oxygen levels for optimal growth. This strain is part of the Campylobacter genus, which is known for its distinctive spiral shape and motility conferred by a single polar flagellum. The microaerophilic nature of C. coli suggests it thrives in environments where oxygen concentration is lower than that of the atmosphere, which may include gastrointestinal tracts of animals or certain environmental niches. As a member of the Campylobacter species, C. coli is often associated with poultry and other livestock, where it may play a role in the microbiota of these hosts. The ability to grow in microaerobic conditions implies that it may possess specialized metabolic pathways that allow it to efficiently utilize substrates available in such environments while avoiding oxidative stress. The unique adaptation of C. coli strain VA46 to microaerophilic conditions highlights its potential ecological role in nutrient cycling within animal hosts and possibly in the broader ecosystem, where it may interact with other microbial communities. Understanding these traits is crucial for comprehending the ecological dynamics in which C. coli operates, particularly in relation to its habitat and interactions with other microorganisms.

Taxonomy

KingdomPseudomonadati
PhylumCampylobacterota
ClassEpsilonproteobacteria
OrderCampylobacterales
FamilyCampylobacteraceae
GenusCampylobacter
SpeciesCampylobacter coli
Strainstrain VA46

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Campylobacter coli strain VA46
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsMicroaerophile
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Campylobacter coli strain VA46


Gene Summary

Adenine Count

674994 bp

Thymine Count

671439 bp

Guanine Count

305511 bp

Cytosine Count

302440 bp

Genome Length

1954479 bp

Protein-coding Genes

1896 genes

Non-Coding Genes

48 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
hypothetical proteinBOQ02_00005Not Available+1 - 35113394.6
hypothetical proteinBOQ02_00010Not Available+362 - 84118899.6
phosphoribosylglycinamide formyltransferaseBOQ02_00015Not Available-893 - 146821649.4
bifunctional adp-dependent (s)-nad(p)h-hydrate dehydratase/nad(p)h-hydrate epimeraseBOQ02_00020Not Available-1459 - 282950505.5
hypothetical proteinBOQ02_00025Not Available-2813 - 351127561.9
fis family transcriptional regulatorBOQ02_00030Not Available-3513 - 501856579.7
peptide deformylaseBOQ02_00035Not Available-5015 - 554220516.8
atp-dependent clp endopeptidase, proteolytic subunit clppBOQ02_00040Not Available-5570 - 615421736.5
trigger factorBOQ02_00045Not Available-6154 - 747950719.9
gtp cyclohydrolase i foleBOQ02_00050Not Available+7600 - 817221814.6

Displaying genes 1 – 10 of 1944 in total

Metabolites

1 record
Metabolite IDMetabolite nameStructureCAS number
BASm0014029(S)-3-Hydroxyisobutyric acidC19H35N5O6SeChemical structure of (S)-3-Hydroxyisobutyric acid26543-05-5
Average508.489Da
Monoisotopic509.175256Da

Displaying 1–1 of 1 metabolites