BacMap Statistics

Comparison of the content and functionality available across BacMap versions.

Feature	BacMap 3.0	BacMap 1.0	BacMap 2.0
No. of Bacteria & Archaea species	23,524	170	1,747
No. of Chromosomes & Plasmids (Replicons)	32,866	177	1,790
No. of Genes	101,742,312	483,200	4,838,288
No. of Gene fields	64	51	63
No. of Canonical Pathways	1,756	0	0
No. of 3D Protein Structures	95,637,773	0	0
No. of Metabolites	45,284	0	0
No. of Strain Attributes	36	21	36
No. of Bacterial Images	10,847	170	1,320
Bacterial Descriptions	√	√	√
Gene Search	√	√	√
Protein Search	√	√	√
16S RNA Search	√	–	–
Genome Search	√	–	–
Metabolite Structure Search	√	–	–
Interactive Chromosome Map	√	√	√
Multi-track Viewing	√	–	–
3D Structure Viewer	√	–	–

Gene Field Comparison

Comparison of gene-level information available across major genomic databases.

Gene Field	BacMap 3.0	NCBI RefSeq	EBD	KEGG	GTDB
Gene ID / Locus Tag	√	√	√	—	—
Gene Name	√	√	√	√	√
Protein	√	√	√	√	√
Gene Abbrev.	√	√	√	√	√
Feature Type	√	√	√	—	—
Start Position	√	√	√	√	√
Stop Position	√	√	√	√	√
Strand Orientation	√	√	√	√	√
Sequence Length	√	√	√	√	√
DNA Sequence	√	√	√	√	√
Preceding Gene	√	—	—	—	—
Following Gene	√	—	—	—	—
Protein ID	√	√	√	—	—
AA Sequence	√	√	√	√	√
Molecular Weight	√	√	√	—	—
Theoretical pI	√	—	—	—	—
Tryptophan	√	—	—	—	—
Methionine	√	—	—	—	—
Cysteine	√	—	—	—	—
Tyrosine	√	—	—	—	—
Tryptophan/Tyrosine	√	—	—	—	—
Cysteine/Methionine	√	—	—	—	—
Function	√	√	√	√	√
GO Function	√	√	√	—	—
GO Process	√	√	√	—	—
GO Component	√	√	√	—	—
COGs	√	√	√	√	√
Description	√	√	√	√	√
InterPro	√	√	√	—	—
Pfam	√	√	√	—	√
PROSITE	√	√	√	—	—
UniProt	√	√	√	√	—
UniProt E-value	√	√	√	—	—
EMBL	√	√	√	√	—
PIR	√	√	√	√	—
PDB	√	√	√	√	—
3D Protein Models	√	√	√	√	—
Active Site	√	√	√	—	—
Metal Ion	√	—	—	—	—
Cofactor	√	√	√	√	—
kcat	√	—	—	—	—
Theoretical UV Absorbance	√	—	—	—	—
Transmembrane Region	√	√	√	—	—
Signal Peptide Start	√	√	√	—	—
Signal Peptide End	√	√	√	—	—
Cellular Location	√	√	√	—	—
Secondary Structure	√	√	√	√	—
Operon Status	√	—	—	—	—
Operon Member	√	—	—	—	—
Paralogs	√	—	√	√	—
Paralog Relationships	√	—	√	√	—
Reaction	√	√	√	√	—
Reactions	√	√	√	√	—
Pathways	√	√	√	√	—
Metabolites	√	—	—	√	—
Upstream 100 bp	√	—	—	—	—
Downstream 100 bp	√	—	—	—	—
GC Content	√	√	√	—	√
Contig Start	√	√	√	√	√
Contig End	√	√	√	√	√
Contig Tag	√	√	√	√	√
Region Index	√	—	—	—	—
Centisome	√	—	—	—	—
Index	√	—	—	—	—
PHASTEST E-value	√	—	—	—	—
Phage/Bacterial Class	√	—	—	—	—
Date Created	√	√	√	√	√