Campylobacter coli strain VA38

Gram-negativeMicroaerophile

Kingdom

Pseudomonadati

Phylum

Campylobacterota

Class

Epsilonproteobacteria

Order

Campylobacterales

Family

Campylobacteraceae

Genus

Campylobacter

Description

Campylobacter coli strain VA38 is a Gram-negative bacterium characterized by its microaerophilic oxygen requirement. This organism is part of the Campylobacter genus, which is known for its spiral-shaped morphology and motility, although specific morphological details for strain VA38 are not provided. The microaerophilic nature of C. coli indicates that it thrives in environments with reduced oxygen levels, typically ranging from 5% to 10%, which is critical for its metabolic processes. As a member of the Campylobacter genus, C. coli is often associated with various animal hosts, including livestock, and plays a role in the gastrointestinal microbiota of these animals. While the strain's specific ecological niche has not been detailed, the general behavior of Campylobacter species suggests it may be involved in nutrient cycling within its habitat. The adaptation to microaerophilic conditions might confer a competitive advantage within the gastrointestinal tract, where oxygen levels are typically low and fluctuating. Understanding the traits of Campylobacter coli strain VA38 can provide insights into its potential roles in microbial communities and its interactions with host organisms. The strain's adaptability to microaerophilic environments highlights its potential involvement in the maintenance of gut homeostasis and the dynamics of microbial ecosystems in specific habitats. Further investigations into its ecological role could elucidate the functional contributions of this strain to microbial community structures.

Taxonomy

KingdomPseudomonadati
PhylumCampylobacterota
ClassEpsilonproteobacteria
OrderCampylobacterales
FamilyCampylobacteraceae
GenusCampylobacter
SpeciesCampylobacter coli
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsMicroaerophile
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Campylobacter coli strain VA38


Gene Summary

Adenine Count

598683 bp

Thymine Count

611657 bp

Guanine Count

278021 bp

Cytosine Count

285552 bp

Genome Length

1773931 bp

Protein-coding Genes

1735 genes

Non-Coding Genes

51 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
23s ribosomal rnaNot AvailableNot Available+229 - 3151Not Available
basic amino acid abc transporter substrate-binding proteinBOQ01_00010Not Available+676 - 144628446.7
had family hydrolaseBOQ01_00015Not Available-1469 - 210724785.4
abc transporter atp-binding proteinBOQ01_00020Not Available-2104 - 309337441.1
5s ribosomal rnaNot AvailableNot Available+3295 - 3411Not Available
abc transporter permeaseBOQ01_00025Not Available-3096 - 387529135.6
abc transporter permeaseBOQ01_00030Not Available-3876 - 471531048.0
nucleotide pyrophosphataseBOQ01_00035Not Available-4712 - 551830532.4
abc transporter substrate-binding proteinBOQ01_00040Not Available-5582 - 662838558.9
magnesium and cobalt transport protein coraBOQ01_00045Not Available+6748 - 773138359.7

Displaying genes 1 – 10 of 1786 in total

Metabolites

1 record
Metabolite IDMetabolite nameStructureCAS number
BASm0014029(S)-3-Hydroxyisobutyric acidC19H35N5O6SeChemical structure of (S)-3-Hydroxyisobutyric acid26543-05-5
Average508.489Da
Monoisotopic509.175256Da

Displaying 1–1 of 1 metabolites