Sphingobium indicum B90A

Gram-negativeRodNon-motileAerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingobiaceae

Genus

Sphingobium

Description

Sphingobium indicum B90A is a Gram-negative, rod-shaped bacterium that thrives in terrestrial environments and exhibits an aerobic mode of respiration. The optimal growth temperature for this microbe is approximately 28.0°C, suggesting a preference for moderate climate conditions typical of many soil habitats. As an aerobic organism, S. indicum B90A relies on oxygen for its metabolic processes, which may influence its distribution within soil profiles where oxygen availability varies. The identification of S. indicum B90A contributes to our understanding of microbial diversity in terrestrial ecosystems and highlights its potential role in biogeochemical cycles. Given its aerobic nature and specific habitat preferences, this bacterium may play a crucial part in the degradation of organic matter and the cycling of nutrients in soil environments. Further exploration of its metabolic capabilities could provide insights into its ecological functions and potential applications in bioremediation or soil health management.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingobiaceae
GenusSphingobium
SpeciesSphingobium indicum
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Sphingobium indicum B90A
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAerobic
Optimal temperature28
Temperature rangeMesophilic
HabitatTerrestrial
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingobium indicum B90A


Gene Summary

Adenine Count

18265 bp

Thymine Count

17821 bp

Guanine Count

34491 bp

Cytosine Count

37853 bp

Genome Length

108430 bp

Protein-coding Genes

93 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

4

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
AttlNot AvailableNot Available+1257857 - 1257905Not Available
Hypothetical proteinSIDU_RS06090Not Available-1266711 - 1272773220814.0
hypothetical proteinSIDU_RS06095Not Available-1272773 - 127479772115.4
Hypothetical proteinSIDU_RS06100Not Available-1274797 - 127532118125.1
Putative internal virion protein aSIDU_RS06105Not Available-1275314 - 127577517299.0
Hypothetical proteinSIDU_RS06110Not Available-1275768 - 127759165988.9
Putative head closure proteinSIDU_RS06115Not Available-1277591 - 127821121727.8
Putative tail tubular protein aSIDU_RS06120Not Available-1278201 - 127885124006.6
hypothetical proteinSIDU_RS06125Not Available-1278902 - 128025145594.0
hypothetical proteinSIDU_RS06130Not Available-1280291 - 128068914294.4

Displaying genes 1 – 10 of 3833 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

5 records
Metabolite IDMetabolite nameStructureCAS number
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm00019783-(4-hydroxyphenyl)pyruvateC9H7O4Chemical structure of 3-(4-hydroxyphenyl)pyruvateNot available
Average179.1495Da
Monoisotopic179.034433712Da
BASm0004559(6E)-8-oxolinaloolC10H16O2Chemical structure of (6E)-8-oxolinaloolNot available
Average168.236Da
Monoisotopic168.1150298Da
BASm000806817-(4-hydroxyphenyl)heptadecanoateC23H37O3Chemical structure of 17-(4-hydroxyphenyl)heptadecanoateNot available
Average361.547Da
Monoisotopic361.2748186Da
BASm000807119-(4-hydroxyphenyl)nonadecanoateC25H41O3Chemical structure of 19-(4-hydroxyphenyl)nonadecanoateNot available
Average389.601Da
Monoisotopic389.3061188Da

Displaying 1–5 of 5 metabolites