Sphingobium indicum B90A

Gram-negativeRodNon-motileAerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingobiaceae

Genus

Sphingobium

Description

Sphingobium indicum B90A is a Gram-negative, rod-shaped bacterium that thrives in terrestrial environments and exhibits an aerobic mode of respiration. The optimal growth temperature for this microbe is approximately 28.0°C, suggesting a preference for moderate climate conditions typical of many soil habitats. As an aerobic organism, S. indicum B90A relies on oxygen for its metabolic processes, which may influence its distribution within soil profiles where oxygen availability varies. The identification of S. indicum B90A contributes to our understanding of microbial diversity in terrestrial ecosystems and highlights its potential role in biogeochemical cycles. Given its aerobic nature and specific habitat preferences, this bacterium may play a crucial part in the degradation of organic matter and the cycling of nutrients in soil environments. Further exploration of its metabolic capabilities could provide insights into its ecological functions and potential applications in bioremediation or soil health management.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingobiaceae
GenusSphingobium
SpeciesSphingobium indicum
StrainB90A

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Sphingobium indicum B90A
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAerobic
Optimal temperature28
Temperature rangeMesophilic
HabitatTerrestrial
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingobium indicum B90A


Gene Summary

Adenine Count

24637 bp

Thymine Count

24225 bp

Guanine Count

43824 bp

Cytosine Count

46532 bp

Genome Length

139218 bp

Protein-coding Genes

120 genes

Non-Coding Genes

5 genes

# of Chromosomes/Plasmids

4

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
AttlNot AvailableNot Available+1257857 - 1257905Not Available
Hypothetical proteinSIDU_RS06090Not Available-1266711 - 1272773220814.0
hypothetical proteinSIDU_RS06095Not Available-1272773 - 127479772115.4
Hypothetical proteinSIDU_RS06100Not Available-1274797 - 127532118125.1
Putative internal virion protein aSIDU_RS06105Not Available-1275314 - 127577517299.0
Hypothetical proteinSIDU_RS06110Not Available-1275768 - 127759165988.9
Putative head closure proteinSIDU_RS06115Not Available-1277591 - 127821121727.8
Putative tail tubular protein aSIDU_RS06120Not Available-1278201 - 127885124006.6
hypothetical proteinSIDU_RS06125Not Available-1278902 - 128025145594.0
hypothetical proteinSIDU_RS06130Not Available-1280291 - 128068914294.4

Displaying genes 1 – 10 of 3833 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

25 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000228(3R,4S,5S,6R)-pentachlorocyclohexeneC6H5Cl5Chemical structure of (3R,4S,5S,6R)-pentachlorocyclohexeneNot available
Average254.36Da
Monoisotopic251.8833887Da
BASm00004283-oxoadipateC6H6O5Chemical structure of 3-oxoadipateNot available
Average158.11Da
Monoisotopic158.022620453Da
BASm0000848hexanoateC6H11O2Chemical structure of hexanoateNot available
Average115.1503Da
Monoisotopic115.075904596Da
BASm0001142butanoateC4H7O2Chemical structure of butanoateNot available
Average87.099Da
Monoisotopic87.045153045Da
BASm0001225dodecanoateC12H23O2Chemical structure of dodecanoateNot available
Average199.3098Da
Monoisotopic199.169805Da
BASm0001283(3R,6R)-1,3,4,6-tetrachlorocyclohexa-1,4-dieneC6H4Cl4Chemical structure of (3R,6R)-1,3,4,6-tetrachlorocyclohexa-1,4-dieneNot available
Average217.9Da
Monoisotopic215.9067109Da
BASm0001362octadecanoateC18H35O2Chemical structure of octadecanoateNot available
Average283.4693Da
Monoisotopic283.263705364Da
BASm00014072,5-dichlorohydroquinoneC6H4Cl2O2Chemical structure of 2,5-dichlorohydroquinoneNot available
Average179Da
Monoisotopic177.9588348Da
BASm0001429decanoateC10H19O2Chemical structure of decanoateNot available
Average171.2567Da
Monoisotopic171.138504852Da
BASm00016432,5-dichlorocyclohexa-2,5-dien-1,4-diolC6H6Cl2O2Chemical structure of 2,5-dichlorocyclohexa-2,5-dien-1,4-diolNot available
Average181.01Da
Monoisotopic179.9744848Da

Displaying 1–10 of 25 metabolites