Sphingobium indicum BiD32

Gram-negativeRodNon-motileAerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingobiaceae

Genus

Sphingobium

Description

Sphingobium indicum BiD32 is a Gram-negative, aerobic bacterium characterized by its rod-shaped morphology and optimal growth at 28.0°C. This microbe is predominantly found in terrestrial habitats, indicating its adaptation to land-based environments. The Gram-negative nature of S. indicum BiD32 suggests a complex cell wall structure, which may contribute to its resilience in various terrestrial ecosystems. The aerobic requirement of this organism implies that it relies on oxygen for its metabolic processes, aligning with its habitat preferences where oxygen availability is typically sufficient. This trait may enable S. indicum BiD32 to participate in biogeochemical cycles within its environment, potentially influencing nutrient dynamics in soil ecosystems. Given its specific growth conditions and habitat, Sphingobium indicum BiD32 may play a role in the biodegradation of organic compounds in terrestrial environments, particularly under aerobic conditions. Understanding its metabolic capabilities could provide insights into its ecological functions and potential applications in bioremediation efforts, particularly in the degradation of pollutants in soil.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingobiaceae
GenusSphingobium
SpeciesSphingobium indicum
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Sphingobium indicum BiD32
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAerobic
Optimal temperature28
Temperature rangeMesophilic
HabitatTerrestrial
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingobium indicum BiD32


Gene Summary

Adenine Count

896313 bp

Thymine Count

890938 bp

Guanine Count

1507905 bp

Cytosine Count

1492765 bp

Genome Length

4788005 bp

Protein-coding Genes

4671 genes

Non-Coding Genes

49 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
lipopolysaccharide biosynthesis protein wzxcEBBID32_10Not Available+130 - 161752574.1
Trna-trna-ileNot AvailableNot Available+144 - 1648Not Available
protein containing domains duf404, duf407EBBID32_20Not Available-1775 - 318451658.1
hypothetical proteinEBBID32_30Not Available+3318 - 416028981.7
Trna-metNot AvailableNot Available+4258 - 4334Not Available
cold shock protein cspaEBBID32_40Not Available+4663 - 48787628.99
hypothetical proteinEBBID32_50Not Available+4956 - 51687586.72
hypothetical proteinEBBID32_60Not Available+5265 - 54627067.33
hypothetical proteinEBBID32_70Not Available+5462 - 582412661.1
Trna-5s rnaNot AvailableNot Available+5490 - 5609Not Available

Displaying genes 1 – 10 of 4720 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

3 records
Metabolite IDMetabolite nameStructureCAS number
BASm00004283-oxoadipateC6H6O5Chemical structure of 3-oxoadipateNot available
Average158.11Da
Monoisotopic158.022620453Da
BASm0017271NADC21H28N7O14P2Chemical structure of NAD53-84-9
Average664.433Da
Monoisotopic664.116946663Da
BASm00174922-MaleylacetateC6H6O5Chemical structure of 2-Maleylacetate24740-88-3
Average158.1088Da
Monoisotopic158.021523302Da

Displaying 1–3 of 3 metabolites