Sphingobium indicum UT26S

Gram-negativeRodNon-motileAerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingobiaceae

Genus

Sphingobium

Description

Sphingobium indicum UT26S is a Gram-negative, rod-shaped bacterium that thrives in terrestrial habitats and exhibits aerobic metabolic activity. Its optimal growth temperature is approximately 28.0°C, indicating a preference for moderate environmental conditions. This microbe's Gram-negative cell wall structure is characterized by a thin peptidoglycan layer, which is typical of this group and plays a role in its interaction with the surrounding environment. The aerobic nature of Sphingobium indicum UT26S suggests that it relies on oxygen for its respiratory processes, which may influence its distribution in soil ecosystems where oxygen levels can fluctuate. The habitat preference for terrestrial environments highlights its potential role in soil microbiomes, possibly contributing to nutrient cycling or the degradation of organic matter. Understanding the traits of Sphingobium indicum UT26S can provide insights into the ecological functions of similar microorganisms within terrestrial ecosystems, emphasizing their importance in maintaining soil health and facilitating biogeochemical processes. Furthermore, the optimal growth temperature of 28.0°C positions this bacterium within a range that may be conducive to its survival in temperate climates, suggesting a resilience to environmental variations.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingobiaceae
GenusSphingobium
SpeciesSphingobium indicum
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Sphingobium indicum UT26S
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAerobic
Optimal temperature28
Temperature rangeMesophilic
HabitatTerrestrial
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingobium indicum UT26S


Gene Summary

Adenine Count

1024 bp

Thymine Count

1082 bp

Guanine Count

1533 bp

Cytosine Count

1759 bp

Genome Length

5398 bp

Protein-coding Genes

7 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

5

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
hypothetical proteinSJA_RS21760Not Available+690 - 108214622.3
outer membrane beta-barrel proteinSJA_RS20735Not Available+1254 - 202427183.3
mobq family relaxaseSJA_RS20740P20085-2147 - 337045755.5
hypothetical proteinSJA_RS20745Not Available+3538 - 381310102.1
hypothetical proteinSJA_RS20750Not Available+3806 - 424616215.3
type ii toxin-antitoxin system pemk/mazf family toxinSJA_RS20755A0R0N4-4257 - 457711555.3
antitoxin maze family proteinSJA_RS20760Not Available-4574 - 47958424.06
Terminase large subunitSJA_RS05740Not Available+1211843 - 121315646045.3
hypothetical proteinSJA_RS05745Not Available+1213392 - 121373011091.5
Portal proteinSJA_RS05750Q1RIH4+1213843 - 121497339707.7

Displaying genes 1 – 10 of 4249 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

66 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000553biphenyl-2,3-diolC12H10O2Chemical structure of biphenyl-2,3-diolNot available
Average186.2066Da
Monoisotopic186.0680796Da
BASm0000686vanillateC8H7O4Chemical structure of vanillateNot available
Average167.1388Da
Monoisotopic167.0344337Da
BASm0000719chloramphenicol 3-acetateC13H14Cl2N2O6Chemical structure of chloramphenicol 3-acetateNot available
Average365.16Da
Monoisotopic364.0228916Da
BASm0001167triphosphateO10P3Chemical structure of triphosphate14127-68-5
Average252.9153Da
Monoisotopic252.8704308Da
BASm0001514Fe(III)-enterobactinC30H21FeN3O15Chemical structure of Fe(III)-enterobactinNot available
Average719.344Da
Monoisotopic719.0322092Da
BASm0001697(S)-4,5-dihydroxypentane-2,3-dioneC5H8O4Chemical structure of (S)-4,5-dihydroxypentane-2,3-dioneNot available
Average132.1146Da
Monoisotopic132.042258744Da
BASm0001717fumarateC4H2O4Chemical structure of fumarateNot available
Average114.0563Da
Monoisotopic113.9953086Da
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm00019783-(4-hydroxyphenyl)pyruvateC9H7O4Chemical structure of 3-(4-hydroxyphenyl)pyruvateNot available
Average179.1495Da
Monoisotopic179.034433712Da

Displaying 1–10 of 66 metabolites