Sphingobium indicum UT26S

Gram-negativeRodNon-motileAerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingobiaceae

Genus

Sphingobium

Description

Sphingobium indicum UT26S is a Gram-negative, rod-shaped bacterium that thrives in terrestrial habitats and exhibits aerobic metabolic activity. Its optimal growth temperature is approximately 28.0°C, indicating a preference for moderate environmental conditions. This microbe's Gram-negative cell wall structure is characterized by a thin peptidoglycan layer, which is typical of this group and plays a role in its interaction with the surrounding environment. The aerobic nature of Sphingobium indicum UT26S suggests that it relies on oxygen for its respiratory processes, which may influence its distribution in soil ecosystems where oxygen levels can fluctuate. The habitat preference for terrestrial environments highlights its potential role in soil microbiomes, possibly contributing to nutrient cycling or the degradation of organic matter. Understanding the traits of Sphingobium indicum UT26S can provide insights into the ecological functions of similar microorganisms within terrestrial ecosystems, emphasizing their importance in maintaining soil health and facilitating biogeochemical processes. Furthermore, the optimal growth temperature of 28.0°C positions this bacterium within a range that may be conducive to its survival in temperate climates, suggesting a resilience to environmental variations.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingobiaceae
GenusSphingobium
SpeciesSphingobium indicum
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Sphingobium indicum UT26S
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAerobic
Optimal temperature28
Temperature rangeMesophilic
HabitatTerrestrial
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingobium indicum UT26S


Gene Summary

Adenine Count

116935 bp

Thymine Count

115341 bp

Guanine Count

221911 bp

Cytosine Count

227705 bp

Genome Length

681892 bp

Protein-coding Genes

560 genes

Non-Coding Genes

10 genes

# of Chromosomes/Plasmids

5

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
hypothetical proteinSJA_RS21760Not Available+690 - 108214622.3
outer membrane beta-barrel proteinSJA_RS20735Not Available+1254 - 202427183.3
mobq family relaxaseSJA_RS20740P20085-2147 - 337045755.5
hypothetical proteinSJA_RS20745Not Available+3538 - 381310102.1
hypothetical proteinSJA_RS20750Not Available+3806 - 424616215.3
type ii toxin-antitoxin system pemk/mazf family toxinSJA_RS20755A0R0N4-4257 - 457711555.3
antitoxin maze family proteinSJA_RS20760Not Available-4574 - 47958424.06
Terminase large subunitSJA_RS05740Not Available+1211843 - 121315646045.3
hypothetical proteinSJA_RS05745Not Available+1213392 - 121373011091.5
Portal proteinSJA_RS05750Q1RIH4+1213843 - 121497339707.7

Displaying genes 1 – 10 of 4249 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

1776 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000419S-formylmycothiolC18H30N2O13SChemical structure of S-formylmycothiolNot available
Average514.5Da
Monoisotopic514.146860208Da
BASm00004283-oxoadipateC6H6O5Chemical structure of 3-oxoadipateNot available
Average158.11Da
Monoisotopic158.022620453Da
BASm00005166-deoxyerythronolide BC21H38O6Chemical structure of 6-deoxyerythronolide BNot available
Average386.5228Da
Monoisotopic386.2668389Da

Displaying 1–10 of 1776 metabolites