Rhodococcus ruber strain R1

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Mycobacteriales

Family

Nocardiaceae

Genus

Rhodococcus

Description

Rhodococcus ruber strain R1 is a Gram-positive bacterium primarily found in soil environments. This strain is part of the genus Rhodococcus, which is known for its diverse metabolic capabilities and adaptability to various ecological niches. The presence of this microbe in soil suggests its potential role in biogeochemical cycles, particularly in the degradation of organic compounds. Rhodococcus species, including strain R1, exhibit notable resilience in varying soil conditions, which may be attributed to their robust cell wall structure characteristic of Gram-positive bacteria. This structural feature may confer advantages in withstanding environmental stresses such as desiccation or fluctuating nutrient availability. In addition to its survival strategies, Rhodococcus ruber strain R1 is likely to contribute to soil health and fertility through its interactions with organic matter. These interactions can facilitate the breakdown of complex organic substrates, thereby enhancing nutrient availability for other soil microorganisms and plants. The metabolic versatility of this strain may also imply its involvement in the bioremediation processes, where it could assist in the detoxification of pollutants. Overall, the ecological role of Rhodococcus ruber strain R1 in soil ecosystems underscores the importance of microbial diversity in maintaining soil quality and function, highlighting its potential contributions to sustainable agricultural practices and environmental management.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMycobacteriales
FamilyNocardiaceae
GenusRhodococcus
SpeciesRhodococcus ruber
Strainstrain R1

Profile

Physiology
Gram staining propertiesPositive
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatSoil
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rhodococcus ruber strain R1


Gene Summary

Adenine Count

786417 bp

Thymine Count

786676 bp

Guanine Count

1890309 bp

Cytosine Count

1889220 bp

Genome Length

5352622 bp

Protein-coding Genes

4843 genes

Non-Coding Genes

68 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
hypothetical proteinE2561_RS25010Not Available+418 - 6518101.68
response regulator transcription factorE2561_RS25015Not Available-1077 - 170321779.3
hypothetical proteinE2561_RS25020Not Available+2879 - 30917032.71
hypothetical proteinE2561_RS25025Not Available+3250 - 387022345.5
hypothetical proteinE2561_RS25030Not Available+3950 - 41838329.87
hypothetical proteinE2561_RS25035Not Available+6474 - 701920429.3
helix-turn-helix domain-containing proteinE2561_RS25040Not Available-7081 - 73298776.67
hypothetical proteinE2561_RS25045Not Available-7896 - 824312921.2
hypothetical proteinE2561_RS25050Not Available-8444 - 934331693.6
duf6355 family natural product biosynthesis proteinE2561_RS25055Not Available+9497 - 980510598.6

Displaying genes 1 – 10 of 4944 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites