Rhodococcus ruber strain YC-YT1

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Mycobacteriales

Family

Nocardiaceae

Genus

Rhodococcus

Description

Rhodococcus ruber strain YC-YT1 is a Gram-positive bacterium predominantly found in soil environments. This strain, belonging to the genus Rhodococcus, is characterized by its ability to metabolize a variety of organic compounds, which may contribute to its role in soil biogeochemical cycles. The Gram-positive nature of R. ruber strain YC-YT1 suggests a thick peptidoglycan layer in its cell wall, which may confer certain advantages in harsh soil conditions, such as increased resistance to desiccation. R. ruber strains, including YC-YT1, are often studied for their potential applications in bioremediation due to their metabolic versatility. This metabolic capability allows them to utilize different carbon sources, which can be crucial for survival in diverse soil habitats. Additionally, their presence in soil ecosystems indicates a potential role in nutrient cycling, as they may participate in the degradation of organic matter. The ecological significance of R. ruber strain YC-YT1 may extend to its interactions with other soil microorganisms, contributing to community dynamics and overall soil health. These interactions can influence nutrient availability and microbial diversity, impacting broader ecological processes. The adaptability of R. ruber strain YC-YT1 highlights the importance of soil-dwelling microorganisms in maintaining the balance of terrestrial ecosystems.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMycobacteriales
FamilyNocardiaceae
GenusRhodococcus
SpeciesRhodococcus ruber
Strainstrain YC-YT1

Profile

Physiology
Gram staining propertiesPositive
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatSoil
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rhodococcus ruber strain YC-YT1


Gene Summary

Adenine Count

838143 bp

Thymine Count

839814 bp

Guanine Count

1998922 bp

Cytosine Count

1992973 bp

Genome Length

5669852 bp

Protein-coding Genes

5139 genes

Non-Coding Genes

89 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
Transposase dna binding domain proteinYT1_RS11385Not Available+2221491 - 222265443601.5
HydrolaseYT1_RS11390Not Available-2222685 - 222352429814.7
AttlNot AvailableNot Available+2223867 - 2223903Not Available
Putative integraseYT1_RS27820Not Available+2223984 - 222479929720.7
hypothetical proteinYT1_RS11400Not Available+2224810 - 22250558457.23
Hypothetical proteinYT1_RS11405Not Available-2225062 - 222555016061.0
Minor tail proteinYT1_RS11410Not Available-2225550 - 222648231336.6
Hypothetical proteinYT1_RS11415Not Available-2226496 - 2229375103430.0
Hypothetical proteinYT1_RS11420Not Available-2229401 - 223219996122.9
hypothetical proteinYT1_RS11425Not Available-2232203 - 223249610542.0

Displaying genes 1 – 10 of 5228 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites