Rhodococcus ruber strain YYL

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Mycobacteriales

Family

Nocardiaceae

Genus

Rhodococcus

Description

Rhodococcus ruber strain YYL is a Gram-positive bacterium primarily found in soil environments. This strain exhibits distinct characteristics that align with the broader traits of the Rhodococcus genus, known for its metabolic versatility and ability to degrade a variety of organic compounds. As a member of the Actinobacteria phylum, R. ruber strain YYL possesses a robust cell wall structure, typical of Gram-positive organisms, which contributes to its resilience in diverse soil conditions. The ecological role of this strain is likely significant, as soil-dwelling bacteria such as R. ruber are essential for nutrient cycling and organic matter decomposition. This particular strain may participate in the breakdown of complex organic materials, thereby facilitating soil health and fertility. Moreover, the adaptability of R. ruber strain YYL to various environmental stressors suggests potential applications in bioremediation, particularly in the degradation of pollutants. The metabolic pathways utilized by this strain could be further explored to understand its capabilities in transforming environmental contaminants into less harmful substances. Overall, R. ruber strain YYL exemplifies the ecological importance of soil bacteria in maintaining ecosystem stability and their potential utility in environmental biotechnology.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMycobacteriales
FamilyNocardiaceae
GenusRhodococcus
SpeciesRhodococcus ruber
Strainstrain YYL

Profile

Physiology
Gram staining propertiesPositive
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatSoil
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rhodococcus ruber strain YYL


Gene Summary

Adenine Count

38842 bp

Thymine Count

39959 bp

Guanine Count

78903 bp

Cytosine Count

78650 bp

Genome Length

236354 bp

Protein-coding Genes

211 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

3

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
gpr1/fun34/yaah family transporterCSW53_RS26515Not Available-11453 - 1211822341.6
is630 family transposaseCSW53_RS26520Not Available-12164 - 1327341668.0
mmob/dmpm family proteinCSW53_RS26525Not Available-13522 - 1387512588.8
aromatic/alkene monooxygenase hydroxylase subunit betaCSW53_RS26530Not Available-13875 - 1491539288.9
fad-binding oxidoreductaseCSW53_RS26535Not Available-14946 - 1603440111.9
methane monooxygenaseCSW53_RS26540Not Available-16158 - 1779562454.3
aldehyde dehydrogenase family proteinCSW53_RS26545Not Available-17945 - 1944753607.8
ethd family reductaseCSW53_RS26550Not Available-19600 - 1992311827.7
gntr family transcriptional regulatorCSW53_RS26555Not Available+20844 - 2145223194.1
is1380 family transposaseCSW53_RS26560Not Available-21793 - 2320250370.8

Displaying genes 11 – 20 of 5576 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites