Rhodococcus ruber strain YYL

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Mycobacteriales

Family

Nocardiaceae

Genus

Rhodococcus

Description

Rhodococcus ruber strain YYL is a Gram-positive bacterium primarily found in soil environments. This strain exhibits distinct characteristics that align with the broader traits of the Rhodococcus genus, known for its metabolic versatility and ability to degrade a variety of organic compounds. As a member of the Actinobacteria phylum, R. ruber strain YYL possesses a robust cell wall structure, typical of Gram-positive organisms, which contributes to its resilience in diverse soil conditions. The ecological role of this strain is likely significant, as soil-dwelling bacteria such as R. ruber are essential for nutrient cycling and organic matter decomposition. This particular strain may participate in the breakdown of complex organic materials, thereby facilitating soil health and fertility. Moreover, the adaptability of R. ruber strain YYL to various environmental stressors suggests potential applications in bioremediation, particularly in the degradation of pollutants. The metabolic pathways utilized by this strain could be further explored to understand its capabilities in transforming environmental contaminants into less harmful substances. Overall, R. ruber strain YYL exemplifies the ecological importance of soil bacteria in maintaining ecosystem stability and their potential utility in environmental biotechnology.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMycobacteriales
FamilyNocardiaceae
GenusRhodococcus
SpeciesRhodococcus ruber
Strainstrain YYL

Profile

Physiology
Gram staining propertiesPositive
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatSoil
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rhodococcus ruber strain YYL


Gene Summary

Adenine Count

15332 bp

Thymine Count

15112 bp

Guanine Count

30356 bp

Cytosine Count

30096 bp

Genome Length

90897 bp

Protein-coding Genes

88 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

3

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
(fe-s)-binding proteinCSW53_RS26460Not Available+141 - 74621317.6
nramp family divalent metal transporterCSW53_RS28430Not Available-997 - 145116456.0
hypothetical proteinCSW53_RS26475Not Available-2037 - 240212722.7
nramp family divalent metal transporterCSW53_RS26480Not Available+2539 - 412057941.7
nramp family divalent metal transporterCSW53_RS26485Not Available+4117 - 448213105.5
o-methyltransferaseCSW53_RS26490Not Available+4560 - 517722214.2
sdr family oxidoreductaseCSW53_RS26495Not Available-5231 - 601626895.6
tn3 family transposaseCSW53_RS26500Not Available-6090 - 9083110811.0
nramp family divalent metal transporterCSW53_RS26505Not Available-9177 - 949711229.7
aldehyde dehydrogenase family proteinCSW53_RS26510Not Available-9760 - 1114849698.3

Displaying genes 1 – 10 of 5576 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites