Bacteroides fragilis 638R

Gram-negativeRodNon-motileAnaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Bacteroidaceae

Genus

Bacteroides

Description

Bacteroides fragilis 638R is a Gram-negative, rod-shaped bacterium that primarily exists as single cells and thrives in anaerobic environments, with an optimal growth temperature of 37.0°C. As a chemoorganotroph, this microbe derives its energy from organic compounds, which aligns with its habitat as a host-associated organism, often found in the intestinal microbiota of humans and other animals. Bacteroides fragilis species are known for their significant role in the gut microbiome, where they contribute to the breakdown of complex carbohydrates and the production of short-chain fatty acids, which are crucial for gut health and host metabolism. The ability of B. fragilis 638R to survive in the oxygen-deprived conditions of the gut underscores its adaptation to a niche that is essential for maintaining a balanced microbiome. Understanding the metabolic profiles and ecological roles of bacteria like B. fragilis 638R can provide insights into their contributions to host health and the potential implications of dysbiosis in various diseases.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyBacteroidaceae
GenusBacteroides
SpeciesBacteroides fragilis
Strain638R

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Bacteroides fragilis 638R
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementSingles
SporulationNot Available
Energy sourceChemoorganotroph
PathogenicityNot Available

Genome Summary

Bacteroides fragilis 638R


Gene Summary

Adenine Count

1516915 bp

Thymine Count

1523463 bp

Guanine Count

1164365 bp

Cytosine Count

1168378 bp

Genome Length

5373121 bp

Protein-coding Genes

4308 genes

Non-Coding Genes

109 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
AttlNot AvailableNot Available+4289846 - 4289861Not Available
3_nc_021792: site specific recombinase, tyrosineBF638R_RS17415Not Available+4290022 - 429135652256.9
slbb domain-containing proteinBF638R_RS17420Not Available-4291582 - 429369077763.7
duf6808 domain-containing proteinBF638R_RS17425Not Available-4294095 - 429455917545.4
Putative n-acetylmuramoyl-l-alanine amidaseBF638R_RS17430Not Available-4294556 - 429505018478.0
HolinBF638R_RS17435Not Available-4295936 - 429637016430.6
hypothetical proteinBF638R_RS17440Not Available-4296659 - 429699112241.3
hypothetical proteinBF638R_RS17445Not Available-4296995 - 429727910614.7
Putative phage tail fibre proteinBF638R_RS17450Not Available-4297330 - 4300941129736.0
Hypothetical proteinBF638R_RS17455Not Available-4300938 - 430298678030.2

Displaying genes 1 – 10 of 4417 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

412 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000642S-adenosyl-4-methylsulfanyl-2-oxobutanoateC15H19N5O6SChemical structure of S-adenosyl-4-methylsulfanyl-2-oxobutanoateNot available
Average397.406Da
Monoisotopic397.105604055Da
BASm0000893crotonobetaineC7H13NO2Chemical structure of crotonobetaine927-89-9
Average143.1836Da
Monoisotopic143.0946287Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001035indole-3-pyruvateC11H8NO3Chemical structure of indole-3-pyruvate35656-49-6
Average202.1861Da
Monoisotopic202.0504181Da

Displaying 1–10 of 412 metabolites