Saccharomonospora viridis DSM 43017

Gram-positiveMotileAerobic

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Pseudonocardiales

Family

Pseudonocardiaceae

Genus

Saccharomonospora

Description

Saccharomonospora viridis have been isolated from hot composts in Europe and USA, and also from soil in Japan. The type strain was isolated from an Irish peat bog before 1963 at a depth of about 2.5 m. Although it is an actinobacteria S.viridis has the unusual phenotype of being a Gram-negative organism, while showing the typical mycelium morphology of Saccharomonospora. Spores of S. viridis are readily dispersed in air, and the prolonged exposure to them correlates with acute respiratory distress (farmer's lung disease). The optimal temperature for growth is 55 degrees Celsius, but 45 degrees Celsius for aerial mycelium formation and pigment production; it is aerobic. It can incompletely metabolize pentachlorophenol, contributing to degradation of PCP in situ. It produces the antibiotic thermoviridin which acts mostly against Gram-positive bacteria. It contains the menaquinones MK-9(H4) and MK-8(H4) (adapted from http://standardsingenomics.org/index.php/sigen/article/view/sigs.20263/76). (EBI Integr8)

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderPseudonocardiales
FamilyPseudonocardiaceae
GenusSaccharomonospora
SpeciesSaccharomonospora viridis
StrainDSM 43017

Profile

Physiology
Gram staining propertiesPositive
ShapeNot Available
MobilityYes
Flagellar presenceYes
Number of membranes2
Ecology, Host, and Life Cycle
Oxygen requirementsAerobic
Optimal temperature37
Temperature rangeThermophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Homo sapiens
Cell arrangementNot Available
SporulationSporulating
Energy sourceNot Available
PathogenicityYes

Genome Summary

Saccharomonospora viridis DSM 43017


Gene Summary

Adenine Count

705775 bp

Thymine Count

702403 bp

Guanine Count

1447224 bp

Cytosine Count

1452947 bp

Genome Length

4308349 bp

Protein-coding Genes

3897 genes

Non-Coding Genes

61 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
chromosomal replication initiator protein dnaaSVIR_RS00005Not Available+99 - 189265749.0
dna polymerase iii subunit betaSVIR_RS00010Not Available+2762 - 390139421.9
phosphogluconate dehydrogenase (nad(+)-dependent, decarboxylating)SVIR_RS00015Not Available+3934 - 482731923.9
dna replication/repair protein recfSVIR_RS00020Not Available+4827 - 599942469.5
dcia family proteinSVIR_RS00025Not Available+6181 - 679521729.7
dna topoisomerase (atp-hydrolyzing) subunit bSVIR_RS00030Not Available+7083 - 904772472.8
dna gyrase subunit aSVIR_RS00035Not Available+9100 - 1162593152.1
duf3566 domain-containing proteinSVIR_RS00040Not Available+11657 - 1240325051.3
Trna-ileNot AvailableNot Available+12456 - 12529Not Available
nucleotidyltransferase domain-containing proteinSVIR_RS00050Not Available-12785 - 1355227986.8

Displaying genes 1 – 10 of 3958 in total

Metabolites

405 records
Metabolite IDMetabolite nameStructureCAS number
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm00004283-oxoadipateC6H6O5Chemical structure of 3-oxoadipateNot available
Average158.11Da
Monoisotopic158.022620453Da
BASm00005166-deoxyerythronolide BC21H38O6Chemical structure of 6-deoxyerythronolide BNot available
Average386.5228Da
Monoisotopic386.2668389Da
BASm0000553biphenyl-2,3-diolC12H10O2Chemical structure of biphenyl-2,3-diolNot available
Average186.2066Da
Monoisotopic186.0680796Da
BASm0000592(S)-1-phenylethanolC8H10OChemical structure of (S)-1-phenylethanolNot available
Average122.1644Da
Monoisotopic122.0731649Da
BASm0000893crotonobetaineC7H13NO2Chemical structure of crotonobetaine927-89-9
Average143.1836Da
Monoisotopic143.0946287Da
BASm0001003phthalateC8H4O4Chemical structure of phthalateNot available
Average164.117Da
Monoisotopic164.0120558Da

Displaying 1–10 of 405 metabolites