Bacteroides fragilis str. B1 (UDC16-1)

Gram-negativeRodNon-motileAnaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Bacteroidaceae

Genus

Bacteroides

Description

Bacteroides fragilis strain B1 (UDC16-1) is a Gram-negative, rod-shaped bacterium that exists primarily as single cells. This anaerobic microbe thrives at an optimal temperature of 37.0°C, aligning with the typical physiological conditions of its host-associated habitat. As a chemoorganotroph, B. fragilis str. B1 utilizes organic compounds as its energy source, reflecting its adaptation to environments rich in organic matter, such as the gastrointestinal tract of mammals. The strain's anaerobic nature suggests a metabolic reliance on fermentation processes rather than oxidative phosphorylation, which is consistent with its ecological niche within oxygen-depleted environments. These traits collectively indicate that Bacteroides fragilis str. B1 plays a significant role in the complex microbial communities associated with mammalian hosts, possibly contributing to the breakdown of complex carbohydrates and the production of short-chain fatty acids, which are beneficial to host health. Understanding the specific adaptations of B. fragilis str. B1 within its anaerobic and host-associated environment can provide insights into its ecological role and interactions within the gut microbiome, potentially influencing both microbial diversity and host metabolism.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyBacteroidaceae
GenusBacteroides
SpeciesBacteroides fragilis
StrainB1 (UDC16-1)

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Bacteroides fragilis str. B1 (UDC16-1)
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementSingles
SporulationNot Available
Energy sourceChemoorganotroph
PathogenicityNot Available

Genome Summary

Bacteroides fragilis str. B1 (UDC16-1)


Gene Summary

Adenine Count

2164945 bp

Thymine Count

2165896 bp

Guanine Count

1638080 bp

Cytosine Count

1634486 bp

Genome Length

7603407 bp

Protein-coding Genes

6122 genes

Non-Coding Genes

134 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
Putative tail fiber proteinM069_5189Not Available-236278 - 23747142596.1
Hypothetical proteinM069_5190Not Available-237468 - 23951678030.2
Tail length tape measure proteinM069_5191Not Available-239513 - 242506108449.0
hypothetical proteinM069_5192Not Available-242607 - 24322423836.9
1_nc_021790: phage tail proteinM069_5193Not Available-243291 - 24377016726.9
hypothetical proteinM069_5194Not Available-243802 - 24417013881.6
hypothetical proteinM069_5195Not Available-244170 - 2444429830.74
phage head-tail joining family proteinM069_5196Not Available-244622 - 24494512303.0
Head-tail connector iiM069_5197Not Available-244942 - 24525011444.6
1_nc_021804: phage capsid proteinM069_5198Not Available-245254 - 24649845359.8

Displaying genes 1 – 10 of 6256 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites