Bacteroides fragilis CL05T12C13

Gram-negativeRodNon-motileAnaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Bacteroidaceae

Genus

Bacteroides

Description

Bacteroides fragilis CL05T12C13 is a Gram-negative, rod-shaped bacterium that typically exists in a single-cell arrangement. This anaerobic microbe is classified as a chemoorganotroph, deriving its energy from organic compounds, and has an optimal growth temperature of 37.0°C, which aligns with the typical conditions found within the mammalian host environment. As a member of the Bacteroides genus, B. fragilis CL05T12C13 is predominantly host-associated, suggesting a symbiotic relationship with its host, likely contributing to gut microbiota composition and function. The anaerobic nature of this organism indicates that it thrives in low-oxygen environments, which is characteristic of the intestinal tract where it plays a role in the fermentation of complex carbohydrates and the production of short-chain fatty acids. Understanding the specific traits of Bacteroides fragilis CL05T12C13 can provide insights into its role in maintaining gut health and its potential influence on host metabolism. The ability of this bacterium to adapt to anaerobic conditions while participating in essential biochemical processes highlights its importance in the microbiome, particularly in the context of nutrient absorption and immune system modulation.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyBacteroidaceae
GenusBacteroides
SpeciesBacteroides fragilis
StrainCL05T12C13

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Bacteroides fragilis CL05T12C13
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementSingles
SporulationNot Available
Energy sourceChemoorganotroph
PathogenicityNot Available

Genome Summary

Bacteroides fragilis CL05T12C13


Gene Summary

Adenine Count

1456745 bp

Thymine Count

1524596 bp

Guanine Count

1179143 bp

Cytosine Count

1111974 bp

Genome Length

5272458 bp

Protein-coding Genes

4436 genes

Non-Coding Genes

67 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
5s ribosomal rnaNot AvailableNot Available+1 - 90Not Available
5s ribosomal rnaNot AvailableNot Available+39 - 148Not Available
5s ribosomal rnaNot AvailableNot Available+59 - 168Not Available
hypothetical proteinHMPREF1080_00001Not Available+1159 - 190828134.1
hypothetical proteinHMPREF1080_00002Not Available+1917 - 311644885.1
hypothetical proteinHMPREF1080_00003Not Available-3162 - 356915344.5
hypothetical proteinHMPREF1080_00004Not Available-3586 - 533166691.8
susc/raga family tonb-linked outer membrane proteinHMPREF1080_00005Not Available-5343 - 8534118292.0
hypothetical proteinHMPREF1080_00006Not Available-8586 - 1023861993.8
sugar porter (sp) family mfs transporterHMPREF1080_00007P96710-10262 - 1163549382.6

Displaying genes 1 – 10 of 1082 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

66 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000908propanoateC3H5O2Chemical structure of propanoateNot available
Average73.072Da
Monoisotopic73.029502981Da
BASm0001142butanoateC4H7O2Chemical structure of butanoateNot available
Average87.099Da
Monoisotopic87.045153045Da
BASm0001167triphosphateO10P3Chemical structure of triphosphate14127-68-5
Average252.9153Da
Monoisotopic252.8704308Da
BASm0001330N-acetyl-D-hexosamineC8H15NO6Chemical structure of N-acetyl-D-hexosamineNot available
Average221.209Da
Monoisotopic221.089937207Da
BASm0001586ethyl (R)-3-hydroxybutanoateC6H12O3Chemical structure of ethyl (R)-3-hydroxybutanoateNot available
Average132.159Da
Monoisotopic132.078644246Da
BASm0001680methanophenazineC37H50N2OChemical structure of methanophenazineNot available
Average538.82Da
Monoisotopic538.3923142Da
BASm0001717fumarateC4H2O4Chemical structure of fumarateNot available
Average114.0563Da
Monoisotopic113.9953086Da

Displaying 1–10 of 66 metabolites