Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola dorei |
| Strain | CL03T12C01 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1578661 bp
Thymine Count
1570423 bp
Guanine Count
1116965 bp
Cytosine Count
1121200 bp
Genome Length
5387249 bp
Protein-coding Genes
4417 genes
Non-Coding Genes
106 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dna polymerase iii, beta subunit | HMPREF1065_00674 | Not Available | Positive | 744134 - 745258 | 41279.3 |
| hypothetical protein | HMPREF1065_00675 | Not Available | Positive | 745310 - 746086 | 29605.2 |
| phosphopantothenoylcysteine decarboxylase/phosphopantothenate-cysteine ligase | HMPREF1065_00676 | Not Available | Positive | 746083 - 747279 | 43092.3 |
| dna repair protein recn | HMPREF1065_00677 | Not Available | Positive | 747384 - 749045 | 61939.0 |
| rna methyltransferase, trmh family, group 3 | HMPREF1065_00678 | Not Available | Positive | 749133 - 749900 | 28125.2 |
| hypothetical protein | HMPREF1065_00679 | Not Available | Positive | 749938 - 751638 | 62642.3 |
| trna(ile)-lysidine synthetase | HMPREF1065_00680 | Not Available | Negative | 751777 - 753081 | 49880.2 |
| ferrous iron transporter b | HMPREF1065_00681 | Not Available | Positive | 753202 - 755670 | 92772.5 |
| Trna-cys | Not Available | Not Available | Positive | 755982 - 756056 | Not Available |
| pyridoxine/pyridoxamine 5'-phosphate oxidase | HMPREF1065_00682 | Not Available | Negative | 756235 - 756915 | 26437.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

