Phocaeicola dorei 5_1_36/D4

Gram-negativeRodNon-motileAnaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Bacteroidaceae

Genus

Phocaeicola

Description

Phocaeicola dorei 5_1_36/D4 is a Gram-negative, rod-shaped bacterium that exhibits nonsporulating characteristics and thrives optimally at 37.0°C. This organism is classified as a chemoheterotroph, indicating its reliance on organic compounds for energy and growth. As an anaerobe, P. dorei 5_1_36/D4 requires environments devoid of oxygen, suggesting a lifestyle adapted to conditions where aerobic respiration cannot occur. The presence of this microbe in multiple habitats highlights its ecological versatility, although specific environments have not been delineated. The ability to metabolize various organic substrates allows P. dorei 5_1_36/D4 to occupy diverse ecological niches, potentially contributing to the microbial community dynamics in these habitats. The nonsporulating nature of this bacterium may imply a reliance on stable environmental conditions for survival, as it does not produce spores as a means of enduring adverse conditions. Given its anaerobic metabolism and chemoheterotrophic lifestyle, P. dorei 5_1_36/D4 may play a role in the degradation of organic matter in anaerobic environments, potentially facilitating nutrient cycling. Its adaptability to various habitats could also hint at a broader ecological role in maintaining microbial diversity in anaerobic ecosystems. Further study of this organism could yield insights into its specific contributions to microbial community structure and function in these environments.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyBacteroidaceae
GenusPhocaeicola
SpeciesPhocaeicola dorei
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranesNot Available
Image of Phocaeicola dorei 5_1_36/D4
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceChemoheterotroph
PathogenicityNot Available

Genome Summary

Phocaeicola dorei 5_1_36/D4


Gene Summary

Adenine Count

1590637 bp

Thymine Count

1633510 bp

Guanine Count

1190690 bp

Cytosine Count

1119911 bp

Genome Length

5534748 bp

Protein-coding Genes

4422 genes

Non-Coding Genes

79 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
5s ribosomal rnaNot AvailableNot Available+43 - 152Not Available
5s ribosomal rnaNot AvailableNot Available+69 - 178Not Available
membrane protein, marc familyBSEG_04282Q59071+312 - 95623824.1
groes-like proteinBSEG_04281O35045-1037 - 205636745.9
l-fucose:h+ symporter permeaseBSEG_04280P11551-2080 - 333947155.0
amidohydrolase family proteinBSEG_04279Not Available-3366 - 429235509.2
oxidoreductase, aldo/keto reductase family proteinBSEG_04278O81884-4307 - 523934858.4
transcriptional regulator, arac familyBSEG_04277Not Available-5357 - 621733562.5
alpha-l-fucosidaseBSEG_04276P48300+6459 - 810562720.9
tonb-linked outer membrane protein, susc/raga familyBSEG_04275Not Available+8196 - 11267113468.0

Displaying genes 1 – 10 of 4501 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

385 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000047sophoroseC12H22O11Chemical structure of sophoroseNot available
Average342.297Da
Monoisotopic342.116211528Da
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000272(E)-4-coumarateC9H7O3Chemical structure of (E)-4-coumarateNot available
Average163.1501Da
Monoisotopic163.0395191Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000503L-rhamnoseC6H12O5Chemical structure of L-rhamnose3615-41-6
Average164.1565Da
Monoisotopic164.0684735Da
BASm0000642S-adenosyl-4-methylsulfanyl-2-oxobutanoateC15H19N5O6SChemical structure of S-adenosyl-4-methylsulfanyl-2-oxobutanoateNot available
Average397.406Da
Monoisotopic397.105604055Da

Displaying 1–10 of 385 metabolites