Phocaeicola dorei DSM 17855

Gram-negativeRodNon-motileAnaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Bacteroidaceae

Genus

Phocaeicola

Description

Phocaeicola dorei DSM 17855 is a Gram-negative, nonsporulating rod-shaped bacterium that demonstrates anaerobic metabolic capabilities and thrives optimally at a temperature of 37.0°C. As a chemoheterotroph, P. dorei derives its energy from organic compounds, suggesting a reliance on complex organic substrates for growth and metabolism. This organism has been isolated from diverse habitats, indicating its potential adaptability to various environmental conditions. The anaerobic nature of P. dorei suggests that it is well-suited to environments where oxygen is limited, which is often the case in certain human-associated microbiomes, particularly the gastrointestinal tract. The ability to thrive under these conditions may play a role in its ecological interactions within these niches, potentially influencing microbial community dynamics and host-microbe interactions. Given its metabolic characteristics and habitat diversity, P. dorei may contribute to the breakdown of complex organic matter in anaerobic environments, which can be an essential process in nutrient cycling. This functional role could provide insights into its ecological significance, particularly in maintaining microbial diversity and stability within anaerobic ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyBacteroidaceae
GenusPhocaeicola
SpeciesPhocaeicola dorei
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranesNot Available
Image of Phocaeicola dorei DSM 17855
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceChemoheterotroph
PathogenicityNot Available

Genome Summary

Phocaeicola dorei DSM 17855


Gene Summary

Adenine Count

1561819 bp

Thymine Count

1621837 bp

Guanine Count

1209139 bp

Cytosine Count

1094938 bp

Genome Length

5487768 bp

Protein-coding Genes

4961 genes

Non-Coding Genes

80 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
IntegraseBACDOR_02956Not Available+3257564 - 325845934429.7
hypothetical proteinBACDOR_02957Not Available-3258501 - 32586445481.82
hypothetical proteinBACDOR_02958Not Available+3258740 - 325913215269.9
AcetylmuramidaseBACDOR_02959Not Available+3259125 - 32593136906.33
AttlNot AvailableNot Available+3259326 - 3259337Not Available
Putative endolysinBACDOR_02960Not Available+3259332 - 325964612051.5
hypothetical proteinBACDOR_02961Not Available+3259636 - 325992910839.3
hypothetical proteinBACDOR_02962Not Available+3259965 - 32601687703.49
hypothetical proteinBACDOR_02963Not Available+3260204 - 32603656190.87
hypothetical proteinBACDOR_02964Not Available+3260392 - 32605475996.63

Displaying genes 1 – 10 of 5041 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

37 records
Metabolite IDMetabolite nameStructureCAS number
BASm00004283-oxoadipateC6H6O5Chemical structure of 3-oxoadipateNot available
Average158.11Da
Monoisotopic158.022620453Da
BASm0000592(S)-1-phenylethanolC8H10OChemical structure of (S)-1-phenylethanolNot available
Average122.1644Da
Monoisotopic122.0731649Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm00013353-oxo-3-phenylpropanoateC9H7O3Chemical structure of 3-oxo-3-phenylpropanoateNot available
Average163.153Da
Monoisotopic163.0400677Da
BASm0001462ubiquinone-0C9H10O4Chemical structure of ubiquinone-0605-94-7
Average182.1733Da
Monoisotopic182.057908808Da
BASm00031102-dehydro-3-deoxy-D-galactonateC6H10O6Chemical structure of 2-dehydro-3-deoxy-D-galactonateNot available
Average178.14Da
Monoisotopic178.0477381Da
BASm00033532-dehydro-3-deoxy-6-phospho-D-galactonateC6H8O9PChemical structure of 2-dehydro-3-deoxy-6-phospho-D-galactonate32120-43-7
Average255.0961Da
Monoisotopic254.9905934Da
BASm00034237-phospho-2-dehydro-3-deoxy-D-arabino-heptonateC7H10O10PChemical structure of 7-phospho-2-dehydro-3-deoxy-D-arabino-heptonateNot available
Average285.122Da
Monoisotopic285.0028043Da
BASm0003448(4,5-dihydro-5-oxofuran-2-yl)-acetateC6H5O4Chemical structure of (4,5-dihydro-5-oxofuran-2-yl)-acetateNot available
Average141.103Da
Monoisotopic141.0193322Da
BASm0003671(S)-muconolactoneC6H5O4Chemical structure of (S)-muconolactoneNot available
Average141.103Da
Monoisotopic141.0193322Da

Displaying 1–10 of 37 metabolites