Clostridioides difficile NAP08

Gram-positiveRodMotileAnaerobe

Kingdom

Bacillati

Phylum

Bacillota

Class

Clostridia

Order

Peptostreptococcales

Family

Peptostreptococcaceae

Genus

Clostridioides

Description

Clostridioides difficile NAP08 is a Gram-positive, rod-shaped bacterium that typically arranges itself in chains, pairs, or singles. This anaerobic microbe thrives at an optimal temperature of 37.0°C, making it well-suited to the warm environments of its hosts. As a chemoorganotroph, C. difficile NAP08 derives its energy from organic compounds, which aligns with its habitat as a host-associated organism. C. difficile is particularly notable for its association with the gastrointestinal tract, where it can influence the microbial community dynamics. The characteristic anaerobic metabolism of this organism allows it to colonize the oxygen-poor niches of the intestines, where it may play a role in the degradation of complex carbohydrates and other organic materials. This metabolic capability not only enables its survival but may also impact the overall health of the host by influencing gut microbiota composition and function. Understanding the specific traits of Clostridioides difficile NAP08, particularly its anaerobic lifestyle and energy acquisition methods, provides insight into its potential roles within the gut ecosystem and underscores the complex interactions that occur between host-associated microbes. Further research into its ecological interactions may illuminate the broader implications of this organism in health and disease contexts.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassClostridia
OrderPeptostreptococcales
FamilyPeptostreptococcaceae
GenusClostridioides
SpeciesClostridioides difficile
StrainNAP08

Profile

Physiology
Gram staining propertiesPositive
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes1
Image of Clostridioides difficile NAP08
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementChains - Pairs - Singles
SporulationNot Available
Energy sourceChemoorganotroph
PathogenicityNot Available

Genome Summary

Clostridioides difficile NAP08


Gene Summary

Adenine Count

1509986 bp

Thymine Count

1348598 bp

Guanine Count

666966 bp

Cytosine Count

496483 bp

Genome Length

4022033 bp

Protein-coding Genes

3741 genes

Non-Coding Genes

68 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
23s ribosomal rnaNot AvailableNot Available+1 - 2501Not Available
16s ribosomal rnaNot AvailableNot Available+105 - 1595Not Available
trka n-terminal domain proteinHMPREF0220_0001Not Available-19 - 59722229.1
Ncrna_class:rnase_p_rnaNot AvailableNot Available+1144 - 1428Not Available
porphobilinogen synthaseHMPREF0220_0002Not Available-740 - 171136213.6
uroporphyrinogen-iii c-methyltransferaseHMPREF0220_0003Not Available-1728 - 323656019.9
hydroxymethylbilane synthaseHMPREF0220_0004Not Available-3217 - 412233525.9
putative precorrin-2 c(20)-methyltransferaseHMPREF0220_0005Not Available-4152 - 458416396.9
Ncrna_class:srp_rnaNot AvailableNot Available+4782 - 4884Not Available
cobalt chelatase (cbik)HMPREF0220_0006Not Available-4585 - 562539108.6

Displaying genes 31 – 40 of 3809 in total

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites