Clostridioides difficile F501

Gram-positiveRodMotileAnaerobe

Kingdom

Bacillati

Phylum

Bacillota

Class

Clostridia

Order

Peptostreptococcales

Family

Peptostreptococcaceae

Genus

Clostridioides

Description

Clostridioides difficile F501 is a Gram-positive, rod-shaped bacterium that typically exists in pairs, chains, or as single cells. This microbe is classified as an anaerobe, thriving in oxygen-free environments, which aligns with its habitat being primarily host-associated. C. difficile F501 is a chemoorganotroph, indicating that it derives its energy from organic compounds. Optimal growth conditions for C. difficile F501 are observed at 37.0°C, which corresponds to the average body temperature of mammals, further supporting its adaptation to a host-associated lifestyle. This temperature preference underscores the organism's potential role in the gut microbiome, where it may interact with the host's metabolic processes. The ability of C. difficile F501 to form chains and pairs may facilitate its survival in competitive environments such as the gastrointestinal tract, where it can potentially form biofilms or establish a resilient presence among the complex microbial community. Understanding the characteristics of C. difficile F501 can provide insights into its ecological role within the gut and its interactions with other microorganisms. Further research could elucidate how its anaerobic metabolism contributes to its fitness in the host environment, particularly in the context of microbial diversity and stability.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassClostridia
OrderPeptostreptococcales
FamilyPeptostreptococcaceae
GenusClostridioides
SpeciesClostridioides difficile
StrainNo strain

Profile

Physiology
Gram staining propertiesPositive
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes1
Image of Clostridioides difficile F501
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementChains - Pairs - Singles
SporulationNot Available
Energy sourceChemoorganotroph
PathogenicityNot Available

Genome Summary

Clostridioides difficile F501


Gene Summary

Adenine Count

1110021 bp

Thymine Count

1122080 bp

Guanine Count

1265373 bp

Cytosine Count

1231135 bp

Genome Length

4728610 bp

Protein-coding Genes

4483 genes

Non-Coding Genes

160 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
CspQOE_0172Not Available+3338963 - 33391637124.35
cbs domain proteinQOE_0173Not Available+3339668 - 334001213025.5
ppic-type ppiase domain proteinQOE_0174Not Available-3340155 - 334091028466.7
Hypothetical proteinQOE_0175Not Available-3341611 - 334211719483.6
Putative repressor proteinQOE_0176Not Available-3342199 - 334251912566.0
Xre family transcriptional regulatorQOE_0177Not Available+3342730 - 33428855806.21
Hypothetical proteinQOE_0178Not Available+3342990 - 334343017578.3
Hypothetical proteinQOE_0179Not Available+3343679 - 334412217196.8
Putative tail sheath proteinQOE_0180Not Available+3344127 - 334519139192.7
Putative tail core proteinQOE_0181Not Available+3345205 - 334563316008.2

Displaying genes 1 – 10 of 4643 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

35 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000558D-galacto-hexodialdoseC6H10O6Chemical structure of D-galacto-hexodialdoseNot available
Average178.14Da
Monoisotopic178.047738Da
BASm0001003phthalateC8H4O4Chemical structure of phthalateNot available
Average164.117Da
Monoisotopic164.0120558Da
BASm0001717fumarateC4H2O4Chemical structure of fumarateNot available
Average114.0563Da
Monoisotopic113.9953086Da
BASm0001786(S,S)-tartrateC4H4O6Chemical structure of (S,S)-tartrateNot available
Average148.071Da
Monoisotopic148.001885Da
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm00019773,4-dihydroxybenzoateC7H5O4Chemical structure of 3,4-dihydroxybenzoateNot available
Average153.114Da
Monoisotopic153.019332221Da
BASm0002051D-fructoseC6H12O6Chemical structure of D-fructose57-48-7
Average180.1559Da
Monoisotopic180.0633881Da
BASm0002833FMNH2C17H21N4O9PChemical structure of FMNH25666-16-0
Average456.3438Da
Monoisotopic456.1046148Da
BASm0002842UDP-alpha-D-xyloseC14H20N2O16P2Chemical structure of UDP-alpha-D-xyloseNot available
Average534.2599Da
Monoisotopic534.028805626Da
BASm0002950(E)-caffeateC9H7O4Chemical structure of (E)-caffeateNot available
Average179.152Da
Monoisotopic179.0349823Da

Displaying 1–10 of 35 metabolites