Phocaeicola vulgatus str. 3975 RP4

Gram-positiveRodNon-motileAnaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Bacteroidaceae

Genus

Phocaeicola

Description

Phocaeicola vulgatus str. 3975 RP4 is a Gram-positive, rod-shaped bacterium that predominantly occurs in a single-cell arrangement. This strain is classified as an anaerobe, indicating its growth in environments devoid of oxygen, which is characteristic of its habitat associated with host organisms. The anaerobic nature of P. vulgatus str. 3975 RP4 suggests a specialized adaptation to the microenvironments within host-associated niches, where oxygen levels are minimal or absent. As a member of the genus Phocaeicola, this bacterium likely plays a role in the complex microbial communities found in the gastrointestinal tracts of various hosts, contributing to the overall microbiome composition. The ability to thrive in anaerobic conditions may provide P. vulgatus str. 3975 RP4 with a competitive advantage in these environments, allowing it to engage in metabolic processes that are not reliant on oxygen. The presence of P. vulgatus str. 3975 RP4 in host-associated habitats could indicate its involvement in nutrient cycling or symbiotic relationships, although the specific interactions and contributions to host physiology remain to be elucidated. The study of this strain may provide insights into the functional roles of anaerobic bacteria within host-associated ecosystems and their potential influence on host health and disease dynamics.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyBacteroidaceae
GenusPhocaeicola
SpeciesPhocaeicola vulgatus
StrainNo strain

Profile

Physiology
Gram staining propertiesPositive
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Phocaeicola vulgatus str. 3975 RP4
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementSingles
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Phocaeicola vulgatus str. 3975 RP4


Gene Summary

Adenine Count

1474624 bp

Thymine Count

1407491 bp

Guanine Count

1006342 bp

Cytosine Count

1101240 bp

Genome Length

4989697 bp

Protein-coding Genes

4567 genes

Non-Coding Genes

121 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
Is21 transposaseM099_4608Not Available+4901139 - 490273761543.2
hypothetical proteinM099_4609Not Available-4902778 - 49029907643.09
Transposase/is proteinM099_4610Not Available+4902980 - 490350419781.3
Phage prohead proteaseM099_4611Not Available-4903578 - 490392813318.6
1_nc_021802: phage portal proteinM099_4612Not Available-4904104 - 490546551079.8
hypothetical proteinM099_4613Not Available+4906028 - 49062949873.16
Nonagvirus)_nc_042025: hypothetical proteinM099_4614Not Available+4906366 - 490669512864.4
hypothetical proteinM099_4615Not Available+4907184 - 490753413836.2
TransposaseM099_4616Not Available+4907545 - 490800017326.1
transposase is66 family proteinM099_0001Not Available+1 - 87333704.3

Displaying genes 1 – 10 of 4688 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites