Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | 3975 RP4 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1474624 bp
Thymine Count
1407491 bp
Guanine Count
1006342 bp
Cytosine Count
1101240 bp
Genome Length
4989697 bp
Protein-coding Genes
4567 genes
Non-Coding Genes
121 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| 16s ribosomal rna | Not Available | Not Available | + | 43 - 1556 | Not Available |
| 5s ribosomal rna | Not Available | Not Available | + | 280 - 389 | Not Available |
| acyltransferase family protein | M099_0002 | Not Available | - | 1081 - 2223 | 43793.9 |
| 16s ribosomal rna | Not Available | Not Available | + | 2811 - 4324 | Not Available |
| endonuclease/exonuclease/phosphatase family protein | M099_0003 | Not Available | - | 2238 - 2981 | 27639.4 |
| h+ antiporter-2 family protein | M099_0004 | Not Available | - | 3122 - 4498 | 49031.6 |
| methionine adenosyltransferase | M099_0005 | Not Available | + | 4776 - 6068 | 47598.8 |
| putative lysine decarboxylase family protein | M099_0006 | Not Available | + | 6183 - 6770 | 21517.4 |
| hypothetical protein | M099_0007 | Not Available | + | 6767 - 7579 | 31597.2 |
| uroporphyrinogen-iii synthase hemd family protein | M099_0008 | Not Available | + | 7668 - 8333 | 25470.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.

