Clostridioides difficile P28

Gram-positiveRodMotileAnaerobe

Kingdom

Bacillati

Phylum

Bacillota

Class

Clostridia

Order

Peptostreptococcales

Family

Peptostreptococcaceae

Genus

Clostridioides

Description

Clostridioides difficile P28 is a Gram-positive, rod-shaped bacterium that typically exists in various arrangements, including chains, pairs, and singles. This microbe is an anaerobic chemoorganotroph, deriving its energy from organic compounds in the absence of oxygen, which aligns with its adaptation to host-associated habitats. The optimal growth temperature for C. difficile P28 is approximately 37.0°C, a condition that corresponds with the physiological temperature of its mammalian hosts. C. difficile is particularly notable for its role in the gastrointestinal tract, where it can influence the microbial balance. Its anaerobic nature suggests that it thrives in environments devoid of oxygen, which is characteristic of the intestinal lumen. This specialized habitat may allow C. difficile P28 to engage in metabolic processes that contribute to its survival and potential interactions with other microbial communities within the host. Understanding the specific traits of C. difficile P28 can provide insights into its ecological role in host-associated environments, particularly in terms of nutrient cycling and its potential impact on gut microbiota composition. The ability to grow in chains and pairs may facilitate its colonization and persistence in the gut, suggesting a potential for cooperative interactions with other microorganisms in the complex intestinal ecosystem.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassClostridia
OrderPeptostreptococcales
FamilyPeptostreptococcaceae
GenusClostridioides
SpeciesClostridioides difficile
StrainP28

Profile

Physiology
Gram staining propertiesPositive
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes1
Image of Clostridioides difficile P28
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementChains - Pairs - Singles
SporulationNot Available
Energy sourceChemoorganotroph
PathogenicityNot Available

Genome Summary

Clostridioides difficile P28


Gene Summary

Adenine Count

1206735 bp

Thymine Count

1212017 bp

Guanine Count

945940 bp

Cytosine Count

964217 bp

Genome Length

4328909 bp

Protein-coding Genes

4723 genes

Non-Coding Genes

80 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
Tail tape measure proteinQSI_0963Not Available-907574 - 910726110865.0
hypothetical proteinQSI_0964Not Available-910742 - 9109066309.69
Hypothetical proteinQSI_0965Not Available-910903 - 91127714424.2
Major tail proteinQSI_0966Not Available-911292 - 91186421180.7
Putative aminopeptidaseQSI_0967Not Available-911870 - 91218712207.4
Orf48QSI_0968Not Available-912180 - 91256313819.6
Head-tail adaptor proteinQSI_0969Not Available-912565 - 91289712601.1
Phage dna packaging proteinQSI_0970Not Available-912897 - 91316910585.4
Major capsid protein precursorQSI_0971Not Available-913235 - 91441943021.7
Putative clp peptidaseQSI_0972Not Available-914435 - 91510324276.4

Displaying genes 11 – 20 of 4803 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

21 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000277keto-L-sorboseC6H12O6Chemical structure of keto-L-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da
BASm0000686vanillateC8H7O4Chemical structure of vanillateNot available
Average167.1388Da
Monoisotopic167.0344337Da
BASm0001717fumarateC4H2O4Chemical structure of fumarateNot available
Average114.0563Da
Monoisotopic113.9953086Da
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm0002751(S)-4-amino-5-oxopentanoateC5H9NO3Chemical structure of (S)-4-amino-5-oxopentanoateNot available
Average131.1299Da
Monoisotopic131.0582432Da
BASm0003112biliverdin IXalphaC33H32N4O6Chemical structure of biliverdin IXalphaNot available
Average580.642Da
Monoisotopic580.233281926Da
BASm0003389NADP(+)C21H25N7O17P3Chemical structure of NADP(+)Not available
Average740.386Da
Monoisotopic740.053624107Da
BASm0003462(2S)-2-[5-amino-1-(5-phospho-beta-D-ribosyl)imidazole-4-carboxamido]succinateC13H19N4O12PChemical structure of (2S)-2-[5-amino-1-(5-phospho-beta-D-ribosyl)imidazole-4-carboxamido]succinate3031-95-6
Average454.2833Da
Monoisotopic454.0737086Da
BASm0003971heme bC34H30FeN4O4Not available14875-96-8
Average614.484Da
Monoisotopic614.162739Da
BASm0003997Fe(II)-heme oC49H56FeN4O5Chemical structure of Fe(II)-heme oNot available
Average836.856Da
Monoisotopic836.361104Da

Displaying 1–10 of 21 metabolites