Clostridioides difficile Y384

Gram-positiveRodMotileAnaerobe

Kingdom

Bacillati

Phylum

Bacillota

Class

Clostridia

Order

Peptostreptococcales

Family

Peptostreptococcaceae

Genus

Clostridioides

Description

Clostridioides difficile Y384 is a Gram-positive, rod-shaped bacterium that typically arranges itself in chains, pairs, or as single cells. This microbe is classified as an anaerobe, indicating that it thrives in environments devoid of oxygen, which aligns with its habitat as a host-associated organism. Clostridioides difficile Y384 is a chemoorganotroph, utilizing organic compounds as its energy source, which is common among many gut-associated microorganisms. The optimal growth temperature for this strain is 37.0°C, reflecting the physiological conditions of the mammalian host environment. The ability of Clostridioides difficile Y384 to form chains and pairs may provide advantages in colonization and persistence within the host, potentially influencing its interactions with the gut microbiome. Understanding the growth characteristics and metabolic capabilities of this strain enhances our knowledge of its ecological role in the host's gastrointestinal tract, where it may participate in complex microbial communities. Further research into its specific interactions and contributions to gut health or dysbiosis may yield insights into its biological significance in the context of host-associated ecosystems.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassClostridia
OrderPeptostreptococcales
FamilyPeptostreptococcaceae
GenusClostridioides
SpeciesClostridioides difficile
StrainY384

Profile

Physiology
Gram staining propertiesPositive
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes1
Image of Clostridioides difficile Y384
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementChains - Pairs - Singles
SporulationNot Available
Energy sourceChemoorganotroph
PathogenicityNot Available

Genome Summary

Clostridioides difficile Y384


Gene Summary

Adenine Count

2341214 bp

Thymine Count

2329045 bp

Guanine Count

1127744 bp

Cytosine Count

1118679 bp

Genome Length

6916682 bp

Protein-coding Genes

6683 genes

Non-Coding Genes

276 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
Minor spike proteinQQG_4341Not Available-430030 - 43101634449.3
Major spike proteinQQG_4342Not Available-431025 - 43155219048.7
Capsid proteinQQG_4343Not Available-431663 - 43294648485.4
Dna packaging proteinQQG_4344Not Available-432983 - 4330994227.24
External scaffolding proteinQQG_4345Not Available-433099 - 4332666108.27
CQQG_4346Not Available-433554 - 4336975406.5
Dna replication initiation protein gpaQQG_4347Not Available-433811 - 43528555897.5
Major capsid proteinQQG_4612Not Available-673783 - 67467332692.8
hypothetical proteinQQG_4613Not Available-674688 - 67530523370.1
hypothetical proteinQQG_4614Not Available-675438 - 67575511938.9

Displaying genes 1 – 10 of 6959 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites