Bacteroides sp. 4_3_47FAA

Gram-negativeAnaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Bacteroidaceae

Genus

Bacteroides

Description

Bacteroides sp. 4_3_47FAA is a Gram-negative, rod-shaped microbe that thrives in anaerobic environments, categorized as a chemoheterotroph and typically residing in the human gut. As an obligate anaerobe, it grows best in oxygen-free conditions, playing a crucial role in the human microbiome by contributing to the fermentation of complex polysaccharides and the production of short-chain fatty acids, which are vital for gut health. This specific strain of Bacteroides falls under the larger Bacteroides genus, known for its diversity and adaptability within various body sites in humans, including the oral cavity, gastrointestinal tract, and occasionally on the skin. The microbe's rod shape and Gram-negative cell wall structure, characterized by a thin peptidoglycan layer and an outer membrane containing lipopolysaccharides, provide it with a defense mechanism against the host's immune system, enabling it to thrive in the competitive environment of the intestines. Bacteroides sp. 4_3_47FAA is known for its significant metabolic capabilities, including the breakdown of dietary fibers that are otherwise indigestible by human enzymes. This process not only aids in nutrient absorption but also helps regulate the immune system and maintain intestinal health. Furthermore, the production of short-chain fatty acids by these microbes has been linked to anti-inflammatory effects and the prevention of certain gut-related diseases. With its symbiotic relationship with humans, Bacteroides sp. 4_3_47FAA plays a pivotal role in maintaining a balanced gut microbiota. Its presence is essential for effective digestion and overall health, demonstrating the intricate interplay between human hosts and their microbial inhabitants. Research into this strain continues to reveal its potential applications in probiotics and therapeutic strategies for metabolic disorders.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyBacteroidaceae
GenusBacteroides
SpeciesBacteroides sp. 4_3_47FAA
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Bacteroides sp. 4_3_47FAA


Gene Summary

Adenine Count

1546120 bp

Thymine Count

1564925 bp

Guanine Count

1162634 bp

Cytosine Count

1156146 bp

Genome Length

5429825 bp

Protein-coding Genes

4706 genes

Non-Coding Genes

90 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
5s ribosomal rnaNot AvailableNot Available+76 - 185Not Available
5s ribosomal rnaNot AvailableNot Available+83 - 192Not Available
5s ribosomal rnaNot AvailableNot Available+132 - 241Not Available
hypothetical proteinBSFG_00125Not Available-257 - 206869117.5
atpase/histidine kinase/dna gyrase b/hsp90 domain proteinBSFG_00126Q08408+2120 - 365859528.5
putative transcriptional regulatory protein rpryBSFG_00127Q9AE24+3663 - 434626151.8
hypothetical proteinBSFG_00128Not Available-4343 - 552743754.9
d-ala-d-ala dipeptidaseBSFG_00129Not Available-5531 - 619625264.8
transcriptional regulator, marr familyBSFG_00130Not Available-6220 - 656713307.3
thioredoxinBSFG_00131Not Available-6605 - 708417688.5

Displaying genes 1 – 10 of 4796 in total

Metabolites

238 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000272(E)-4-coumarateC9H7O3Chemical structure of (E)-4-coumarateNot available
Average163.1501Da
Monoisotopic163.0395191Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000399(S)-allantoinC4H6N4O3Chemical structure of (S)-allantoin97-59-6
Average158.1154Da
Monoisotopic158.0439901Da
BASm00004283-oxoadipateC6H6O5Chemical structure of 3-oxoadipateNot available
Average158.11Da
Monoisotopic158.022620453Da
BASm0000642S-adenosyl-4-methylsulfanyl-2-oxobutanoateC15H19N5O6SChemical structure of S-adenosyl-4-methylsulfanyl-2-oxobutanoateNot available
Average397.406Da
Monoisotopic397.105604055Da

Displaying 1–10 of 238 metabolites