Sphingobium sp. MI1205

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingobiaceae

Genus

Sphingobium

Description

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingobiaceae
GenusSphingobium
SpeciesSphingobium sp. MI1205
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingobium sp. MI1205

NZ_CP005193.1NZ_CP005189.1NZ_CP005190.1NZ_CP005191.1NZ_CP005188.1NZ_CP005192.1

Gene Summary

Adenine Count

54231 bp

Thymine Count

53448 bp

Guanine Count

90330 bp

Cytosine Count

89479 bp

Genome Length

287488 bp

Protein-coding Genes

320 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

6

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
replication initiator protein aK663_RS22760P60119+1 - 111342000.3
ribbon-helix-helix domain-containing proteinK663_RS22765Not Available-1177 - 149110868.0
para family partition atpaseK663_RS22770Not Available-1488 - 214122798.1
sprt-like domain-containing proteinK663_RS22775Not Available-2268 - 290922584.1
type ii toxin-antitoxin system relb/dinj family antitoxinK663_RS22780A0A140ND86+3324 - 360510314.4
type ii toxin-antitoxin system yafq family toxinK663_RS22785Not Available+3574 - 389412212.5
helix-turn-helix domain-containing proteinK663_RS22790Not Available+3930 - 434914875.6
dna-binding transcriptional regulatorK663_RS22795Not Available+4401 - 45625947.41
hypothetical proteinK663_RS22800Not Available+4576 - 47827667.98
hypothetical proteinK663_RS24725Not Available+4769 - 506510456.6

Displaying genes 1 – 10 of 4640 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

25 records
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Mass search
Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

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Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
BASm0000228(3R,4S,5S,6R)-pentachlorocyclohexeneC6H5Cl5Chemical structure of (3R,4S,5S,6R)-pentachlorocyclohexeneNot available
Average254.36Da
Monoisotopic251.8833887Da
BASm0000249(2E,4E)-2,4-dichloromuconateC6H2Cl2O4Chemical structure of (2E,4E)-2,4-dichloromuconateNot available
Average208.98Da
Monoisotopic207.9341111Da
BASm00004283-oxoadipateC6H6O5Chemical structure of 3-oxoadipateNot available
Average158.11Da
Monoisotopic158.022620453Da
BASm00004323,5-dichlorocatecholC6H4Cl2O2Chemical structure of 3,5-dichlorocatecholNot available
Average179.001Da
Monoisotopic177.9588348Da
BASm0000542HgHgChemical structure of HgNot available
Average200.59Da
Monoisotopic201.9706256Da
BASm0000848hexanoateC6H11O2Chemical structure of hexanoateNot available
Average115.1503Da
Monoisotopic115.075904596Da
BASm0001225dodecanoateC12H23O2Chemical structure of dodecanoateNot available
Average199.3098Da
Monoisotopic199.169805Da
BASm0001283(3R,6R)-1,3,4,6-tetrachlorocyclohexa-1,4-dieneC6H4Cl4Chemical structure of (3R,6R)-1,3,4,6-tetrachlorocyclohexa-1,4-dieneNot available
Average217.9Da
Monoisotopic215.9067109Da
BASm0001288(2Z,4E)-2,3,5-trichloromuconateC6HCl3O4Chemical structure of (2Z,4E)-2,3,5-trichloromuconateNot available
Average243.42Da
Monoisotopic241.8951388Da
BASm0001296(2E,4Z)-2-chloromuconateC6H3ClO4Chemical structure of (2E,4Z)-2-chloromuconateNot available
Average174.54Da
Monoisotopic173.9730834Da

Displaying 1–10 of 25 metabolites