Shigella sonnei Ss046

Gram-negativeRodNon-motileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Shigella

Description

Shigella sonnei Ss046 is a gram-negative, rod-shaped bacterium that thrives optimally at moderate temperatures, categorizing it as a mesophile. As a chemoheterotroph, it derives energy from organic compounds and is a facultative anaerobe, allowing it to grow in both aerobic and anaerobic conditions. This microbe primarily inhabits the human gastrointestinal tract, being a causative agent of bacillary dysentery, or shigellosis. The gram-negative cell wall structure of S. sonnei consists of a thin peptidoglycan layer surrounded by an outer membrane rich in lipopolysaccharides. This unique composition contributes to its virulence and resistance to certain antibiotics, making infections challenging to treat. The rod shape enhances its motility within the viscous environment of the intestinal lumen, facilitating colonization and invasion of epithelial cells. As a mesophilic organism, S. sonnei grows best at temperatures ranging from 30°C to 37°C, mirroring the body temperature of its human host. This temperature preference is crucial for its survival and pathogenicity. Being a facultative anaerobe enables S. sonnei to adapt to varying oxygen levels within the intestine, where it ferment carbohydrates to generate energy, even in low-oxygen environments. Shigella sonnei is notable for its ability to cause severe gastrointestinal illness with a low infectious dose—estimated at just 10 to 100 bacteria. This efficiency allows it to spread rapidly, particularly in crowded and unsanitary conditions, such as refugee camps or during outbreaks in institutional settings. The bacterium also has been the subject of research aimed at understanding its pathogenic mechanisms and potential vaccine development, given its significant public health implications.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusShigella
SpeciesShigella sonnei
StrainSs046

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Shigella sonnei Ss046
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Homo sapiens
Cell arrangementPairs - Singles
SporulationNonsporulating
Energy sourceChemoorganotroph
PathogenicityYes

Gene Summary

Adenine Count

1340 bp

Thymine Count

1455 bp

Guanine Count

1293 bp

Cytosine Count

1065 bp

Genome Length

5153 bp

Protein-coding Genes

6 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

5

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
protein repSSON_RS26680Not Available+703 - 166837212.4
hypothetical proteinSSON_RS26685Not Available+1672 - 193810190.5
transposaseSSON_RS26615Not Available+200 - 4428907.68
tetracycline resistance transcriptional repressor tetr(a)SSON_RS26620Not Available-474 - 112423321.6
tetracycline efflux mfs transporter tet(a)SSON_RS26625Not Available+1230 - 242942350.7
is91 family transposaseSSON_RS30410Not Available-2396 - 25847406.65
hypothetical proteinSSON_RS30415Not Available-2628 - 301713111.0
hypothetical proteinSSON_RS26630Not Available+3235 - 367516968.1
hypothetical proteinSSON_RS34025Not Available-4442 - 45915472.2
hypothetical proteinSSON_RS34205Not Available+5162 - 53205816.71

Displaying genes 1 – 10 of 5179 in total

Metabolites

1821 records
Metabolite IDMetabolite nameStructureCAS number
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm00004283-oxoadipateC6H6O5Chemical structure of 3-oxoadipateNot available
Average158.11Da
Monoisotopic158.022620453Da
BASm0000553biphenyl-2,3-diolC12H10O2Chemical structure of biphenyl-2,3-diolNot available
Average186.2066Da
Monoisotopic186.0680796Da
BASm0000592(S)-1-phenylethanolC8H10OChemical structure of (S)-1-phenylethanolNot available
Average122.1644Da
Monoisotopic122.0731649Da
BASm0000893crotonobetaineC7H13NO2Chemical structure of crotonobetaine927-89-9
Average143.1836Da
Monoisotopic143.0946287Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001003phthalateC8H4O4Chemical structure of phthalateNot available
Average164.117Da
Monoisotopic164.0120558Da

Displaying 1–10 of 1821 metabolites