Exiguobacterium sibiricum 255-15

Gram-positiveRodNon-motileFacultative aerobe

Kingdom

Bacillati

Phylum

Bacillota

Class

Bacilli

Order

Caryophanales

Family

Family_XII

Genus

Exiguobacterium

Description

Exiguobacterium sibiricum (strain DSM 17290 / JCM 13490 / 255-15) was isolated from a depth of 43.6 m from a geological layer in the permafrost core of Kolyma Lowland (northeast of Siberia) estimated to be 2-3million years old. Exiguobacterium sibiricum is a psychrophilic non-spore forming Gram-positive bacterium. The cells are rod-shaped, motile with peritrichous flagella and their growth ranges are from -2.5 to 40 degrees Celsius. The cells can vary in shape and size depending on growth temperature. They occur singly, in pairs or infrequently in chains. Colonies appear orange-yellow (on TSA media). They are facultative anaerobes but grow more profusely aerobically. The nearest phylogenetic neighbors to isolate 255-15 were other Kolyma-Indigirka lowland permafrost isolates and grouped closely with the type strain (ATCC 953), isolated from skimmed milk and an Antarctic isolate of Exiguobacterium acetylicum. Through analysis of the transcriptome, experiments can be designed to study microbial survival under a variety of harsh conditions. The issue of long-term survival is of interest in the field of astrobiology. Organisms that survive such hostile environments may be used as models for understanding cellular responses on astral bodies. (EBI Integr8)

Taxonomy

KingdomBacillati
PhylumBacillota
ClassBacilli
OrderCaryophanales
FamilyFamily_XII
GenusExiguobacterium
SpeciesExiguobacterium artemiae
Strain255-15

Profile

Physiology
Gram staining propertiesPositive
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes1
Image of Exiguobacterium sibiricum 255-15
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative aerobe
Optimal temperatureNot Available
Temperature rangePsychrophilic
HabitatSpecialized
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementChains - Singles - Pairs
SporulationNonsporulating
Energy sourceNot Available
PathogenicityNo

Genome Summary

Exiguobacterium sibiricum 255-15


Gene Summary

Adenine Count

565 bp

Thymine Count

470 bp

Guanine Count

430 bp

Cytosine Count

300 bp

Genome Length

1765 bp

Protein-coding Genes

3 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

3

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
chromosomal replication initiator protein dnaaEXIG_RS00005B1YGB2+427 - 182152424.4
dna polymerase iii subunit betaEXIG_RS00010P05649+2009 - 314241906.2
s4 domain-containing protein yaaaEXIG_RS00015P05650+3283 - 35048138.74
dna replication/repair protein recfEXIG_RS00020B1YGB5+3506 - 466044015.9
dna topoisomerase (atp-hydrolyzing) subunit bEXIG_RS00025Q9X3Y6+4671 - 658470978.4
dna gyrase subunit aEXIG_RS00030P05653+6612 - 9272100041.0
hd-gyp domain-containing proteinEXIG_RS00035Q4UU85+9365 - 1041140760.5
16s ribosomal rnaNot AvailableNot Available+10772 - 12333Not Available
23s ribosomal rnaNot AvailableNot Available+12501 - 15415Not Available
5s ribosomal rnaNot AvailableNot Available+15463 - 15578Not Available

Displaying genes 1 – 10 of 3159 in total

Metabolites

15 records
Metabolite IDMetabolite nameStructureCAS number
BASm0001717fumarateC4H2O4Chemical structure of fumarateNot available
Average114.0563Da
Monoisotopic113.9953086Da
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm0002282(2R)-2,3-dihydroxy-3-methylbutanoateC5H9O4Chemical structure of (2R)-2,3-dihydroxy-3-methylbutanoateNot available
Average133.1226Da
Monoisotopic133.0500838Da
BASm0002305(S)-2-ethyl-2-hydroxy-3-oxobutanoateC6H9O4Chemical structure of (S)-2-ethyl-2-hydroxy-3-oxobutanoateNot available
Average145.135Da
Monoisotopic145.0506324Da
BASm0002307(2R,3R)-2,3-dihydroxy-3-methylpentanoateC6H11O4Chemical structure of (2R,3R)-2,3-dihydroxy-3-methylpentanoateNot available
Average147.1491Da
Monoisotopic147.06573384Da
BASm00027107,8-dihydrofolateC19H19N7O6Chemical structure of 7,8-dihydrofolateNot available
Average441.405Da
Monoisotopic441.1407785Da
BASm0002751(S)-4-amino-5-oxopentanoateC5H9NO3Chemical structure of (S)-4-amino-5-oxopentanoateNot available
Average131.1299Da
Monoisotopic131.0582432Da
BASm0003276S-(5-deoxy-D-ribos-5-yl)-L-homocysteineC9H17NO6SChemical structure of S-(5-deoxy-D-ribos-5-yl)-L-homocysteine15912-98-8
Average267.299Da
Monoisotopic267.077658Da
BASm0003389NADP(+)C21H25N7O17P3Chemical structure of NADP(+)Not available
Average740.386Da
Monoisotopic740.053624107Da
BASm0003491(2S)-2-acetolactateC5H7O4Chemical structure of (2S)-2-acetolactateNot available
Average131.108Da
Monoisotopic131.0349823Da

Displaying 1–10 of 15 metabolites