Exiguobacterium sibiricum 255-15

Gram-positiveRodNon-motileFacultative aerobe

Kingdom

Bacillati

Phylum

Bacillota

Class

Bacilli

Order

Caryophanales

Family

Family_XII

Genus

Exiguobacterium

Description

Exiguobacterium sibiricum (strain DSM 17290 / JCM 13490 / 255-15) was isolated from a depth of 43.6 m from a geological layer in the permafrost core of Kolyma Lowland (northeast of Siberia) estimated to be 2-3million years old. Exiguobacterium sibiricum is a psychrophilic non-spore forming Gram-positive bacterium. The cells are rod-shaped, motile with peritrichous flagella and their growth ranges are from -2.5 to 40 degrees Celsius. The cells can vary in shape and size depending on growth temperature. They occur singly, in pairs or infrequently in chains. Colonies appear orange-yellow (on TSA media). They are facultative anaerobes but grow more profusely aerobically. The nearest phylogenetic neighbors to isolate 255-15 were other Kolyma-Indigirka lowland permafrost isolates and grouped closely with the type strain (ATCC 953), isolated from skimmed milk and an Antarctic isolate of Exiguobacterium acetylicum. Through analysis of the transcriptome, experiments can be designed to study microbial survival under a variety of harsh conditions. The issue of long-term survival is of interest in the field of astrobiology. Organisms that survive such hostile environments may be used as models for understanding cellular responses on astral bodies. (EBI Integr8)

Taxonomy

KingdomBacillati
PhylumBacillota
ClassBacilli
OrderCaryophanales
FamilyFamily_XII
GenusExiguobacterium
SpeciesExiguobacterium artemiae
Strain255-15

Profile

Physiology
Gram staining propertiesPositive
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes1
Image of Exiguobacterium sibiricum 255-15
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative aerobe
Optimal temperatureNot Available
Temperature rangePsychrophilic
HabitatSpecialized
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementChains - Singles - Pairs
SporulationNonsporulating
Energy sourceNot Available
PathogenicityNo

Genome Summary

Exiguobacterium sibiricum 255-15


Gene Summary

Adenine Count

1564 bp

Thymine Count

1511 bp

Guanine Count

947 bp

Cytosine Count

863 bp

Genome Length

4885 bp

Protein-coding Genes

5 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

3

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
chromosomal replication initiator protein dnaaEXIG_RS00005B1YGB2+427 - 182152424.4
dna polymerase iii subunit betaEXIG_RS00010P05649+2009 - 314241906.2
s4 domain-containing protein yaaaEXIG_RS00015P05650+3283 - 35048138.74
dna replication/repair protein recfEXIG_RS00020B1YGB5+3506 - 466044015.9
dna topoisomerase (atp-hydrolyzing) subunit bEXIG_RS00025Q9X3Y6+4671 - 658470978.4
dna gyrase subunit aEXIG_RS00030P05653+6612 - 9272100041.0
hd-gyp domain-containing proteinEXIG_RS00035Q4UU85+9365 - 1041140760.5
16s ribosomal rnaNot AvailableNot Available+10772 - 12333Not Available
23s ribosomal rnaNot AvailableNot Available+12501 - 15415Not Available
5s ribosomal rnaNot AvailableNot Available+15463 - 15578Not Available

Displaying genes 1 – 10 of 3159 in total

Metabolites

1 record
Metabolite IDMetabolite nameStructureCAS number
BASm0014029(S)-3-Hydroxyisobutyric acidC19H35N5O6SeChemical structure of (S)-3-Hydroxyisobutyric acid26543-05-5
Average508.489Da
Monoisotopic509.175256Da

Displaying 1–1 of 1 metabolites