Kingdom
Bacillati
Phylum
Bacillota
Class
Clostridia
Order
Eubacteriales
Family
Oscillospiraceae
Genus
Ruminococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Bacillota |
| Class | Clostridia |
| Order | Eubacteriales |
| Family | Oscillospiraceae |
| Genus | Ruminococcus |
| Species | Ruminococcus sp. YRD2003 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Cocci |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 39 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Genome Summary
Ruminococcus sp. YRD2003
Accession NumberFNZT00000000.1
Gene Summary
Adenine Count
886534 bp
Thymine Count
905752 bp
Guanine Count
874295 bp
Cytosine Count
891534 bp
Genome Length
3560550 bp
Protein-coding Genes
3001 genes
Non-Coding Genes
113 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| protein of unknown function | SAMN02910353_00860 | Not Available | + | 971614 - 971790 | 6683.91 |
| listeria/bacterioides repeat-containing protein | SAMN02910353_00861 | Not Available | + | 971817 - 973259 | 52231.6 |
| diguanylate cyclase (ggdef) domain-containing protein | SAMN02910353_00862 | Not Available | - | 973582 - 975486 | 71107.9 |
| acyl-coa synthetase (amp-forming)/amp-acid ligase ii | SAMN02910353_00863 | Not Available | + | 975746 - 977380 | 61156.3 |
| acyl-coa thioesterase | SAMN02910353_00864 | Not Available | + | 977485 - 977877 | 14191.2 |
| isopentenyldiphosphate isomerase | SAMN02910353_00865 | Not Available | + | 978090 - 978881 | 29692.4 |
| putative mn2+ efflux pump mntp | SAMN02910353_00866 | Not Available | - | 978939 - 979508 | 20281.2 |
| acetyltransferase (gnat) family protein | SAMN02910353_00868 | Not Available | - | 979743 - 980243 | 19276.1 |
| dna-binding regulatory protein, yebc/pmpr family | SAMN02910353_00869 | Not Available | - | 980387 - 981121 | 26924.3 |
| hypothetical protein | SAMN02910353_00870 | Not Available | - | 981134 - 981334 | 7224.02 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.