Ruminococcus champanellensis 18P13 = JCM 17042

Gram-positiveCocciAnaerobe

Kingdom

Bacillati

Phylum

Bacillota

Class

Clostridia

Order

Eubacteriales

Family

Oscillospiraceae

Genus

Ruminococcus

Description

Ruminococcus champanellensis 18P13, also known as JCM 17042, is a type of bacterium that thrives in a warm environment, with a temperature preference category of mesophilic, characterized by temperatures between 20-40°C. It is a chemoheterotroph, meaning it obtains its energy by breaking down organic compounds, rather than producing its own energy through photosynthesis or chemosynthesis. Energy production is achieved through aerobic respiration, utilizing oxygen as a final electron acceptor. The bacterium is comprised of a gram-positive cell wall, featuring a characteristic shape of curved rods or "cigar-shaped" cells. Originally isolated from the gut of a ruminant host, such as a cow or sheep, Ruminococcus champanellensis 18P13 is found in the gastrointestinal tract of these animals, as well as potentially in other body sites across various species. Oxygen preference is aerobic, meaning it requires the presence of oxygen to grow and thrive. In fact, it is an obligate aerobic, which suggests that it cannot survive in the absence of oxygen. Furthermore, Ruminococcus champanellensis 18P13 is a key member of the gut microbiota, playing a crucial role in the degradation of complex plant polymers and the extraction of nutrients from the diet of its hosts. Its unique set of enzymes and metabolic pathways allows it to contribute to the breakdown of cellulose, hemicellulose, and other dietary fiber components, ultimately influencing the host's nutritional status and overall health. Despite its limited cultivation on laboratory media, Ruminococcus champanellensis 18P13 has been extensively investigated due to its importance in the ruminant gut ecosystem. Its enzymes and metabolic pathways have been studied in detail, providing valuable insights into the evolution of gut microbiota and the degradation of plant material.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassClostridia
OrderEubacteriales
FamilyOscillospiraceae
GenusRuminococcus
SpeciesRuminococcus champanellensis
StrainNo strain

Profile

Physiology
Gram staining propertiesPositive
ShapeCocci
Mobilitynon-motile
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperature37
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
Sporulationnon-spore-forming
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Ruminococcus champanellensis 18P13 = JCM 17042

Accession NumberNC_021039.1

Gene Summary

Adenine Count

585343 bp

Thymine Count

584638 bp

Guanine Count

693827 bp

Cytosine Count

649573 bp

Genome Length

2573208 bp

Protein-coding Genes

2325 genes

Non-Coding Genes

65 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
AttlNot AvailableNot Available+1862839 - 1862851Not Available
Membrane proteinRUM_RS12160Not Available-1869525 - 1872452103906.0
hypothetical proteinRUM_RS08460Not Available-1872427 - 18726879795.5
hypothetical proteinRUM_RS08465Not Available-1872708 - 187312415621.7
phage major tail protein 2RUM_RS08470Not Available-1873186 - 187360814711.0
minor capsid proteinRUM_RS08475Not Available-1873610 - 187395112755.1
hypothetical proteinRUM_RS08480Not Available-1873948 - 187446019039.9
dnat-like ssdna-binding proteinRUM_RS08485Not Available-1874726 - 187522018263.4
Coat proteinRUM_RS08490Not Available-1875223 - 187629338741.5
Putative scaffold proteinRUM_RS08495Not Available-1876309 - 187687820564.2

Displaying genes 1 – 10 of 2390 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

248 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000272(E)-4-coumarateC9H7O3Chemical structure of (E)-4-coumarateNot available
Average163.1501Da
Monoisotopic163.0395191Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm00008763-hydroxypyruvateC3H3O4Chemical structure of 3-hydroxypyruvateNot available
Average103.054Da
Monoisotopic103.003682157Da
BASm0000908propanoateC3H5O2Chemical structure of propanoateNot available
Average73.072Da
Monoisotopic73.029502981Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001035indole-3-pyruvateC11H8NO3Chemical structure of indole-3-pyruvate35656-49-6
Average202.1861Da
Monoisotopic202.0504181Da
BASm0001142butanoateC4H7O2Chemical structure of butanoateNot available
Average87.099Da
Monoisotopic87.045153045Da
BASm0001167triphosphateO10P3Chemical structure of triphosphate14127-68-5
Average252.9153Da
Monoisotopic252.8704308Da

Displaying 1–10 of 248 metabolites