Kingdom
Bacillati
Phylum
Bacillota
Class
Clostridia
Order
Eubacteriales
Family
Oscillospiraceae
Genus
Ruminococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Bacillota |
| Class | Clostridia |
| Order | Eubacteriales |
| Family | Oscillospiraceae |
| Genus | Ruminococcus |
| Species | Ruminococcus sp. YRD2003 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Cocci |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 39 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Genome Summary
Ruminococcus sp. YRD2003
Accession NumberFNZT00000000.1
Gene Summary
Adenine Count
886534 bp
Thymine Count
905752 bp
Guanine Count
874295 bp
Cytosine Count
891534 bp
Genome Length
3560550 bp
Protein-coding Genes
3001 genes
Non-Coding Genes
113 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| abc-2 type transport system atp-binding protein | SAMN02910353_00850 | Not Available | - | 958203 - 959204 | 37847.3 |
| beta-glucanase, gh16 family | SAMN02910353_00851 | Not Available | + | 959560 - 961686 | 78922.5 |
| arac-type dna-binding protein | SAMN02910353_00852 | Not Available | + | 961834 - 962598 | 29746.4 |
| dna-binding transcriptional regulator, mocr family, contains an aminotransferase domain | SAMN02910353_00853 | Not Available | - | 962696 - 963976 | 47323.1 |
| transglutaminase-like superfamily protein | SAMN02910353_00854 | Not Available | + | 964310 - 965806 | 54479.1 |
| hypothetical protein | SAMN02910353_00855 | Not Available | - | 965852 - 966070 | 8034.63 |
| nad(p)-dependent iron-only hydrogenase catalytic subunit | SAMN02910353_00856 | Not Available | - | 966149 - 967897 | 63285.3 |
| nad(p)-dependent iron-only hydrogenase diaphorase component flavoprotein | SAMN02910353_00857 | Not Available | - | 967913 - 969811 | 68461.0 |
| nad(p)-dependent iron-only hydrogenase diaphorase component iron-sulfur protein | SAMN02910353_00858 | Not Available | - | 969838 - 970335 | 17877.6 |
| hypothetical protein | SAMN02910353_00859 | Not Available | + | 970729 - 971409 | 26604.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.