Kingdom
Bacillati
Phylum
Bacillota
Class
Clostridia
Order
Eubacteriales
Family
Oscillospiraceae
Genus
Ruminococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Bacillota |
| Class | Clostridia |
| Order | Eubacteriales |
| Family | Oscillospiraceae |
| Genus | Ruminococcus |
| Species | Ruminococcus sp. YRD2003 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Cocci |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 39 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Genome Summary
Ruminococcus sp. YRD2003
Accession NumberFNZT00000000.1
Gene Summary
Adenine Count
886534 bp
Thymine Count
905752 bp
Guanine Count
874295 bp
Cytosine Count
891534 bp
Genome Length
3560550 bp
Protein-coding Genes
3001 genes
Non-Coding Genes
113 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| prepilin-type n-terminal cleavage/methylation domain-containing protein | SAMN02910353_00829 | Not Available | + | 930188 - 931498 | 47540.4 |
| leader peptidase (prepilin peptidase) / n-methyltransferase | SAMN02910353_00830 | Not Available | - | 931568 - 932407 | 30984.3 |
| type iv pilus assembly protein pilb | SAMN02910353_00831 | Not Available | + | 932542 - 934218 | 60210.8 |
| twitching motility protein pilt | SAMN02910353_00832 | Not Available | + | 934251 - 935372 | 41674.2 |
| prepilin-type n-terminal cleavage/methylation domain-containing protein | SAMN02910353_00833 | Not Available | + | 935866 - 936558 | 24122.7 |
| carboxyl-terminal processing protease | SAMN02910353_00834 | Not Available | + | 936632 - 937786 | 41890.4 |
| prepilin-type n-terminal cleavage/methylation domain-containing protein | SAMN02910353_00835 | Not Available | + | 937908 - 938588 | 25852.5 |
| signal peptidase i | SAMN02910353_00837 | Not Available | + | 939902 - 940540 | 23501.7 |
| lpxtg-motif cell wall anchor domain-containing protein/pilin isopeptide linkage domain-containing protein | SAMN02910353_00838 | Not Available | + | 940581 - 943892 | 120983.0 |
| lpxtg-motif cell wall anchor domain-containing protein/fimbrial isopeptide formation d2 domain-containing protein | SAMN02910353_00839 | Not Available | + | 943945 - 945576 | 57480.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.