Kingdom
Bacillati
Phylum
Bacillota
Class
Clostridia
Order
Eubacteriales
Family
Oscillospiraceae
Genus
Ruminococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Bacillota |
| Class | Clostridia |
| Order | Eubacteriales |
| Family | Oscillospiraceae |
| Genus | Ruminococcus |
| Species | Ruminococcus sp. YRD2003 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Cocci |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 39 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Genome Summary
Ruminococcus sp. YRD2003
Accession NumberFNZT00000000.1
Gene Summary
Adenine Count
886534 bp
Thymine Count
905752 bp
Guanine Count
874295 bp
Cytosine Count
891534 bp
Genome Length
3560550 bp
Protein-coding Genes
3001 genes
Non-Coding Genes
113 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| mrna interferase mazf | SAMN02910353_00819 | Not Available | + | 917583 - 917930 | 12672.4 |
| hypothetical protein | SAMN02910353_00820 | Not Available | + | 918027 - 919082 | 38855.6 |
| stage v sporulation protein ad | SAMN02910353_00821 | Not Available | + | 919134 - 920156 | 36035.0 |
| stage v sporulation protein ae | SAMN02910353_00822 | Not Available | + | 920153 - 920512 | 12013.8 |
| asparagine synthase (glutamine-hydrolysing) | SAMN02910353_00823 | Not Available | + | 920604 - 922424 | 70290.7 |
| type iv pilus assembly protein pilc | SAMN02910353_00824 | Not Available | + | 922915 - 924114 | 45087.0 |
| type iv pilus assembly protein pilm | SAMN02910353_00825 | Not Available | + | 924139 - 925758 | 59414.3 |
| hypothetical protein | SAMN02910353_00826 | Not Available | + | 925776 - 926558 | 29394.4 |
| transferase hexapeptide (six repeat-containing protein) | SAMN02910353_00827 | Not Available | + | 926618 - 929761 | 114566.0 |
| prepilin-type n-terminal cleavage/methylation domain-containing protein | SAMN02910353_00828 | Not Available | + | 929774 - 930172 | 13770.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.