Kingdom
Bacillati
Phylum
Bacillota
Class
Clostridia
Order
Eubacteriales
Family
Oscillospiraceae
Genus
Ruminococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Bacillota |
| Class | Clostridia |
| Order | Eubacteriales |
| Family | Oscillospiraceae |
| Genus | Ruminococcus |
| Species | Ruminococcus sp. YRD2003 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Cocci |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 39 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Genome Summary
Ruminococcus sp. YRD2003
Accession NumberFNZT00000000.1
Gene Summary
Adenine Count
886534 bp
Thymine Count
905752 bp
Guanine Count
874295 bp
Cytosine Count
891534 bp
Genome Length
3560550 bp
Protein-coding Genes
3001 genes
Non-Coding Genes
113 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| aaa domain (dynein-related subfamily) | SAMN02910353_00739 | Not Available | - | 828925 - 830682 | 67589.3 |
| sh3 domain-containing protein | SAMN02910353_00740 | Not Available | - | 830908 - 832164 | 45207.3 |
| hypothetical protein | SAMN02910353_00741 | Not Available | - | 832373 - 833326 | 34501.2 |
| protein n-acetyltransferase, rimj/riml family | SAMN02910353_00742 | Not Available | - | 833364 - 833891 | 19569.1 |
| 5-methyltetrahydrofolate--homocysteine methyltransferase | SAMN02910353_00743 | Not Available | - | 834079 - 836454 | 83680.1 |
| chorismate mutase / prephenate dehydratase | SAMN02910353_00744 | Not Available | - | 836474 - 837595 | 41247.2 |
| holliday junction endonuclease ruvc | SAMN02910353_00745 | Not Available | + | 838002 - 838487 | 17750.5 |
| holliday junction dna helicase subunit ruva | SAMN02910353_00746 | Not Available | + | 838506 - 839129 | 21751.4 |
| sseb protein n-terminal domain-containing protein | SAMN02910353_00747 | Not Available | + | 839162 - 839893 | 28035.3 |
| holliday junction dna helicase subunit ruvb | SAMN02910353_00748 | Not Available | + | 839932 - 840993 | 38688.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.