Kingdom
Bacillati
Phylum
Bacillota
Class
Clostridia
Order
Eubacteriales
Family
Oscillospiraceae
Genus
Ruminococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Bacillota |
| Class | Clostridia |
| Order | Eubacteriales |
| Family | Oscillospiraceae |
| Genus | Ruminococcus |
| Species | Ruminococcus sp. YRD2003 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Cocci |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 39 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Genome Summary
Ruminococcus sp. YRD2003
Accession NumberFNZT00000000.1
Gene Summary
Adenine Count
886534 bp
Thymine Count
905752 bp
Guanine Count
874295 bp
Cytosine Count
891534 bp
Genome Length
3560550 bp
Protein-coding Genes
3001 genes
Non-Coding Genes
113 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| transcriptional repressor nrdr | SAMN02910353_00598 | Not Available | + | 667249 - 667716 | 18029.6 |
| uncharacterized membrane protein | SAMN02910353_00599 | Not Available | + | 667709 - 668080 | 13853.3 |
| protein of unknown function | SAMN02910353_00600 | Not Available | - | 668168 - 668596 | 15692.5 |
| 16s rrna pseudouridine516 synthase | SAMN02910353_00601 | Not Available | + | 668680 - 669459 | 29058.2 |
| multiple sugar transport system atp-binding protein | SAMN02910353_00602 | Not Available | + | 669571 - 670710 | 42288.1 |
| succinyl-diaminopimelate desuccinylase | SAMN02910353_00603 | Not Available | + | 670846 - 672141 | 46215.7 |
| signal transduction histidine kinase | SAMN02910353_00604 | Not Available | - | 672242 - 673144 | 33054.9 |
| dna-binding response regulator, ompr family, contains rec and winged-helix (whth) domain | SAMN02910353_00605 | Not Available | - | 673144 - 673878 | 27455.4 |
| hypothetical protein | SAMN02910353_00606 | Not Available | - | 674790 - 675131 | 11659.2 |
| ferrous iron transport protein b | SAMN02910353_00607 | Not Available | - | 675399 - 677447 | 72373.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.