Kingdom
Bacillati
Phylum
Bacillota
Class
Clostridia
Order
Eubacteriales
Family
Oscillospiraceae
Genus
Ruminococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Bacillota |
| Class | Clostridia |
| Order | Eubacteriales |
| Family | Oscillospiraceae |
| Genus | Ruminococcus |
| Species | Ruminococcus sp. YRD2003 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Cocci |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 39 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Genome Summary
Ruminococcus sp. YRD2003
Accession NumberFNZT00000000.1
Gene Summary
Adenine Count
886534 bp
Thymine Count
905752 bp
Guanine Count
874295 bp
Cytosine Count
891534 bp
Genome Length
3560550 bp
Protein-coding Genes
3001 genes
Non-Coding Genes
113 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| ribosomal protein s18 acetylase rimi | SAMN02910353_00527 | Not Available | + | 571920 - 572336 | 15852.0 |
| saccharopine dehydrogenase (nad+, l-lysine forming) | SAMN02910353_00528 | Not Available | + | 572399 - 573601 | 44944.0 |
| uncharacterized conserved protein ybjq, upf0145 family | SAMN02910353_00529 | Not Available | + | 573613 - 573927 | 11031.4 |
| carboxynorspermidine decarboxylase | SAMN02910353_00530 | Not Available | + | 573924 - 575063 | 42824.5 |
| ribosomal protein s18 acetylase rimi | SAMN02910353_00531 | Not Available | + | 575077 - 575565 | 18204.8 |
| signal transduction histidine kinase | SAMN02910353_00532 | Not Available | - | 575725 - 576954 | 45522.6 |
| dna-binding response regulator, ompr family, contains rec and winged-helix (whth) domain | SAMN02910353_00533 | Not Available | - | 576956 - 577621 | 24862.3 |
| putative abc transport system atp-binding protein | SAMN02910353_00534 | Not Available | - | 577740 - 578501 | 28451.6 |
| putative abc transport system permease protein | SAMN02910353_00535 | Not Available | - | 578517 - 580883 | 85859.2 |
| hypothetical protein | SAMN02910353_00536 | Not Available | + | 581115 - 581879 | 29267.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.