Kingdom
Bacillati
Phylum
Bacillota
Class
Clostridia
Order
Eubacteriales
Family
Oscillospiraceae
Genus
Ruminococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Bacillota |
| Class | Clostridia |
| Order | Eubacteriales |
| Family | Oscillospiraceae |
| Genus | Ruminococcus |
| Species | Ruminococcus sp. YRD2003 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Cocci |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 39 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Genome Summary
Ruminococcus sp. YRD2003
Accession NumberFNZT00000000.1
Gene Summary
Adenine Count
886534 bp
Thymine Count
905752 bp
Guanine Count
874295 bp
Cytosine Count
891534 bp
Genome Length
3560550 bp
Protein-coding Genes
3001 genes
Non-Coding Genes
113 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| atp-dependent lon protease | SAMN02910353_02623 | Not Available | - | 3010692 - 3013094 | 88971.0 |
| hypothetical protein | SAMN02910353_02624 | Not Available | + | 3013473 - 3014099 | 24161.8 |
| ca2+-transporting atpase | SAMN02910353_02625 | Not Available | + | 3014485 - 3017118 | 93956.6 |
| na+/h+ antiporter nhad | SAMN02910353_02626 | Not Available | + | 3017221 - 3018318 | 39653.1 |
| atp-dependent clp protease atp-binding subunit clpx | SAMN02910353_02627 | Not Available | - | 3018414 - 3019694 | 46998.0 |
| atp-dependent clp protease, protease subunit | SAMN02910353_02628 | Not Available | - | 3019701 - 3020288 | 21407.8 |
| trigger factor | SAMN02910353_02629 | Not Available | - | 3020370 - 3021677 | 48873.3 |
| hypothetical protein | SAMN02910353_02630 | Not Available | - | 3021803 - 3022504 | 26977.1 |
| threonine synthase | SAMN02910353_02631 | Not Available | - | 3022504 - 3023997 | 54798.1 |
| putative endonuclease | SAMN02910353_02632 | Not Available | - | 3024143 - 3024520 | 14079.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.