Kingdom
Bacillati
Phylum
Bacillota
Class
Clostridia
Order
Eubacteriales
Family
Oscillospiraceae
Genus
Ruminococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Bacillota |
| Class | Clostridia |
| Order | Eubacteriales |
| Family | Oscillospiraceae |
| Genus | Ruminococcus |
| Species | Ruminococcus sp. YRD2003 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Cocci |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 39 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Genome Summary
Ruminococcus sp. YRD2003
Accession NumberFNZT00000000.1
Gene Summary
Adenine Count
886534 bp
Thymine Count
905752 bp
Guanine Count
874295 bp
Cytosine Count
891534 bp
Genome Length
3560550 bp
Protein-coding Genes
3001 genes
Non-Coding Genes
113 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| redox-sensing transcriptional repressor | SAMN02910353_02613 | Not Available | - | 3002260 - 3002895 | 23551.3 |
| isocitrate dehydrogenase (nadp) | SAMN02910353_02614 | Not Available | - | 3002936 - 3004147 | 45772.5 |
| hypothetical protein | SAMN02910353_02615 | Not Available | - | 3004188 - 3004397 | 7878.2 |
| hypothetical protein | SAMN02910353_02616 | Not Available | - | 3004416 - 3004763 | 13107.3 |
| hypothetical protein | SAMN02910353_02617 | Not Available | - | 3004765 - 3004947 | 6566.61 |
| trax protein | SAMN02910353_02618 | Not Available | - | 3004983 - 3005735 | 27935.2 |
| aconitase | SAMN02910353_02619 | Not Available | - | 3005735 - 3007672 | 68938.3 |
| hypothetical protein | SAMN02910353_02620 | Not Available | - | 3007933 - 3008205 | 10599.3 |
| diaminopimelate decarboxylase | SAMN02910353_02621 | Not Available | - | 3008198 - 3009496 | 47699.3 |
| gtp-binding protein | SAMN02910353_02622 | Not Available | - | 3010082 - 3010672 | 22353.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.