Kingdom
Bacillati
Phylum
Bacillota
Class
Clostridia
Order
Eubacteriales
Family
Oscillospiraceae
Genus
Ruminococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Bacillota |
| Class | Clostridia |
| Order | Eubacteriales |
| Family | Oscillospiraceae |
| Genus | Ruminococcus |
| Species | Ruminococcus sp. YRD2003 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Cocci |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 39 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Genome Summary
Ruminococcus sp. YRD2003
Accession NumberFNZT00000000.1
Gene Summary
Adenine Count
886534 bp
Thymine Count
905752 bp
Guanine Count
874295 bp
Cytosine Count
891534 bp
Genome Length
3560550 bp
Protein-coding Genes
3001 genes
Non-Coding Genes
113 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| crispr-associated endonuclease/helicase cas3 | SAMN02910353_02593 | Not Available | - | 2979931 - 2981814 | 70956.7 |
| hypothetical protein | SAMN02910353_02594 | Not Available | + | 2982411 - 2983040 | 22204.2 |
| dna-binding transcriptional regulator, iscr family | SAMN02910353_02595 | Not Available | + | 2983058 - 2983495 | 15655.7 |
| uncharacterized protein, pyridoxamine 5'-phosphate oxidase (pnpox-like) family | SAMN02910353_02596 | Not Available | + | 2983545 - 2984162 | 22774.3 |
| hypothetical protein | SAMN02910353_02597 | Not Available | + | 2984292 - 2984642 | 13233.0 |
| n-acetylglutamate synthase, gnat family | SAMN02910353_02598 | Not Available | + | 2984854 - 2985306 | 17169.6 |
| ferredoxin-dependent bilin reductase | SAMN02910353_02599 | Not Available | - | 2985550 - 2986365 | 30649.0 |
| predicted hydrolase of the alpha/beta superfamily | SAMN02910353_02600 | Not Available | - | 2986642 - 2988216 | 60859.1 |
| hypothetical protein | SAMN02910353_02601 | Not Available | - | 2988357 - 2989643 | 47379.2 |
| putative transport protein | SAMN02910353_02602 | Not Available | - | 2990173 - 2991420 | 43972.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.