Kingdom
Bacillati
Phylum
Bacillota
Class
Clostridia
Order
Eubacteriales
Family
Oscillospiraceae
Genus
Ruminococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Bacillota |
| Class | Clostridia |
| Order | Eubacteriales |
| Family | Oscillospiraceae |
| Genus | Ruminococcus |
| Species | Ruminococcus sp. YRD2003 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Cocci |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 39 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Genome Summary
Ruminococcus sp. YRD2003
Accession NumberFNZT00000000.1
Gene Summary
Adenine Count
886534 bp
Thymine Count
905752 bp
Guanine Count
874295 bp
Cytosine Count
891534 bp
Genome Length
3560550 bp
Protein-coding Genes
3001 genes
Non-Coding Genes
113 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| putative abc transport system permease protein | SAMN02910353_02512 | Not Available | - | 2898958 - 2900739 | 66517.8 |
| putative abc transport system atp-binding protein | SAMN02910353_02513 | Not Available | - | 2900729 - 2901493 | 27936.7 |
| hypothetical protein | SAMN02910353_02514 | Not Available | - | 2901587 - 2902582 | 38643.8 |
| dna-binding response regulator, ompr family, contains rec and winged-helix (whth) domain | SAMN02910353_02515 | Not Available | - | 2902579 - 2903241 | 24755.8 |
| hypothetical protein | SAMN02910353_02516 | Not Available | + | 2903774 - 2903986 | 8118.58 |
| rnhcp domain-containing protein | SAMN02910353_02517 | Not Available | - | 2904274 - 2904702 | 15965.2 |
| dna-binding transcriptional regulator, xre-family hth domain | SAMN02910353_02518 | Not Available | - | 2904837 - 2905601 | 28963.6 |
| dna-binding transcriptional regulator, xre-family hth domain | SAMN02910353_02519 | Not Available | - | 2905664 - 2906275 | 22534.2 |
| undecaprenyl-diphosphatase | SAMN02910353_02520 | Not Available | - | 2906245 - 2906931 | 25559.1 |
| chloramphenicol o-acetyltransferase type a | SAMN02910353_02521 | Not Available | - | 2907146 - 2907778 | 23888.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.