Kingdom
Bacillati
Phylum
Bacillota
Class
Clostridia
Order
Eubacteriales
Family
Oscillospiraceae
Genus
Ruminococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Bacillota |
| Class | Clostridia |
| Order | Eubacteriales |
| Family | Oscillospiraceae |
| Genus | Ruminococcus |
| Species | Ruminococcus sp. YRD2003 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Cocci |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 39 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Genome Summary
Ruminococcus sp. YRD2003
Accession NumberFNZT00000000.1
Gene Summary
Adenine Count
886534 bp
Thymine Count
905752 bp
Guanine Count
874295 bp
Cytosine Count
891534 bp
Genome Length
3560550 bp
Protein-coding Genes
3001 genes
Non-Coding Genes
113 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| haloacid dehalogenase superfamily, subfamily ia, variant 3 with third motif having dd or ed | SAMN02910353_02492 | Not Available | + | 2877391 - 2878050 | 24571.5 |
| hypothetical protein | SAMN02910353_02493 | Not Available | + | 2878054 - 2878317 | 10110.7 |
| protein of unknown function | SAMN02910353_02494 | Not Available | + | 2878678 - 2880243 | 53707.5 |
| ca-activated chloride channel family protein | SAMN02910353_02495 | Not Available | - | 2880419 - 2882131 | 62717.3 |
| hypothetical protein | SAMN02910353_02496 | Not Available | - | 2882128 - 2882802 | 24947.0 |
| d-alanyl-d-alanine carboxypeptidase (penicillin-binding protein 5/6) | SAMN02910353_02497 | Not Available | + | 2883269 - 2884681 | 52801.3 |
| n-acetylmuramoyl-l-alanine amidase | SAMN02910353_02498 | Not Available | - | 2884726 - 2885463 | 26658.5 |
| cubico group peptidase, beta-lactamase class c family | SAMN02910353_02499 | Not Available | - | 2885546 - 2886697 | 42159.5 |
| protein of unknown function | SAMN02910353_02500 | Not Available | - | 2886700 - 2886957 | 8713.77 |
| diguanylate cyclase (ggdef) domain-containing protein | SAMN02910353_02501 | Not Available | - | 2886964 - 2888916 | 74492.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.