Kingdom
Bacillati
Phylum
Bacillota
Class
Clostridia
Order
Eubacteriales
Family
Oscillospiraceae
Genus
Ruminococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Bacillota |
| Class | Clostridia |
| Order | Eubacteriales |
| Family | Oscillospiraceae |
| Genus | Ruminococcus |
| Species | Ruminococcus sp. YRD2003 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Cocci |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 39 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Genome Summary
Ruminococcus sp. YRD2003
Accession NumberFNZT00000000.1
Gene Summary
Adenine Count
886534 bp
Thymine Count
905752 bp
Guanine Count
874295 bp
Cytosine Count
891534 bp
Genome Length
3560550 bp
Protein-coding Genes
3001 genes
Non-Coding Genes
113 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SAMN02910353_02431 | Not Available | - | 2800816 - 2801154 | 12806.1 |
| phage/plasmid primase, p4 family, c-terminal domain-containing protein | SAMN02910353_02432 | Not Available | - | 2801294 - 2802691 | 52586.3 |
| site-specific recombinase xerd | SAMN02910353_02433 | Not Available | - | 2802691 - 2803878 | 44641.0 |
| hypothetical protein | SAMN02910353_02434 | Not Available | + | 2804356 - 2806242 | 74403.6 |
| hypothetical protein | SAMN02910353_02435 | Not Available | - | 2807090 - 2807893 | 30336.2 |
| hypothetical protein | SAMN02910353_02436 | Not Available | - | 2807893 - 2808495 | 22927.5 |
| predicted atp-dependent endonuclease of the old family, contains p-loop atpase and toprim domains | SAMN02910353_02437 | Not Available | - | 2808649 - 2810325 | 64615.3 |
| restriction system protein | SAMN02910353_02438 | Not Available | - | 2810347 - 2811330 | 37193.6 |
| probable phosphoglycerate mutase | SAMN02910353_02439 | Not Available | - | 2812300 - 2813028 | 27452.6 |
| pd-(d/e)xk nuclease superfamily protein | SAMN02910353_02440 | Not Available | + | 2813249 - 2813572 | 12150.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.