Kingdom
Bacillati
Phylum
Bacillota
Class
Clostridia
Order
Eubacteriales
Family
Oscillospiraceae
Genus
Ruminococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Bacillota |
| Class | Clostridia |
| Order | Eubacteriales |
| Family | Oscillospiraceae |
| Genus | Ruminococcus |
| Species | Ruminococcus sp. YRD2003 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Cocci |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 39 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Genome Summary
Ruminococcus sp. YRD2003
Accession NumberFNZT00000000.1
Gene Summary
Adenine Count
886534 bp
Thymine Count
905752 bp
Guanine Count
874295 bp
Cytosine Count
891534 bp
Genome Length
3560550 bp
Protein-coding Genes
3001 genes
Non-Coding Genes
113 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| abc-2 type transport system atp-binding protein | SAMN02910353_02411 | Not Available | + | 2775534 - 2776430 | 33235.6 |
| hypothetical protein | SAMN02910353_02412 | Not Available | + | 2776430 - 2777659 | 46401.7 |
| hypothetical protein | SAMN02910353_02413 | Not Available | + | 2777610 - 2778239 | 22729.0 |
| dna-binding response regulator, ompr family, contains rec and winged-helix (whth) domain | SAMN02910353_02414 | Not Available | + | 2778473 - 2779144 | 24924.6 |
| signal transduction histidine kinase | SAMN02910353_02415 | Not Available | + | 2779132 - 2780253 | 41749.5 |
| dna-binding transcriptional regulator, marr family | SAMN02910353_02416 | Not Available | + | 2780741 - 2781190 | 17096.9 |
| nitroreductase | SAMN02910353_02417 | Not Available | + | 2781223 - 2782011 | 29159.2 |
| predicted oxidoreductase | SAMN02910353_02418 | Not Available | + | 2782033 - 2782959 | 34781.8 |
| flavodoxin | SAMN02910353_02419 | Not Available | + | 2783188 - 2783703 | 19024.7 |
| hypothetical protein | SAMN02910353_02420 | Not Available | - | 2784162 - 2785883 | 63038.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.