Kingdom
Bacillati
Phylum
Bacillota
Class
Clostridia
Order
Eubacteriales
Family
Oscillospiraceae
Genus
Ruminococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Bacillota |
| Class | Clostridia |
| Order | Eubacteriales |
| Family | Oscillospiraceae |
| Genus | Ruminococcus |
| Species | Ruminococcus sp. YRD2003 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Cocci |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 39 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Genome Summary
Ruminococcus sp. YRD2003
Accession NumberFNZT00000000.1
Gene Summary
Adenine Count
886534 bp
Thymine Count
905752 bp
Guanine Count
874295 bp
Cytosine Count
891534 bp
Genome Length
3560550 bp
Protein-coding Genes
3001 genes
Non-Coding Genes
113 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| nadh-fmn oxidoreductase rutf, flavin reductase (dim6/ntab) family | SAMN02910353_02401 | Not Available | - | 2755704 - 2756264 | 19852.6 |
| leucine rich repeat-containing protein | SAMN02910353_02402 | Not Available | + | 2756729 - 2758993 | 81226.9 |
| leucine rich repeat-containing protein | SAMN02910353_02403 | Not Available | + | 2759012 - 2761108 | 76070.5 |
| ig-like domain (group 2) | SAMN02910353_02404 | Not Available | + | 2761155 - 2764133 | 108358.0 |
| diguanylate cyclase (ggdef) domain-containing protein | SAMN02910353_02405 | Not Available | + | 2764413 - 2766380 | 74005.9 |
| beta-n-acetylhexosaminidase | SAMN02910353_02406 | Not Available | - | 2766469 - 2768577 | 75308.0 |
| hypothetical protein | SAMN02910353_02407 | Not Available | - | 2768701 - 2769669 | 34942.8 |
| fn3 associated | SAMN02910353_02408 | Not Available | - | 2769874 - 2771673 | 68388.8 |
| eal domain, c-di-gmp-specific phosphodiesterase class i (or its enzymatically inactive variant) | SAMN02910353_02409 | Not Available | + | 2771951 - 2774113 | 79830.2 |
| diguanylate cyclase (ggdef) domain-containing protein | SAMN02910353_02410 | Not Available | + | 2774138 - 2775247 | 41508.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.