Kingdom
Bacillati
Phylum
Bacillota
Class
Clostridia
Order
Eubacteriales
Family
Oscillospiraceae
Genus
Ruminococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Bacillota |
| Class | Clostridia |
| Order | Eubacteriales |
| Family | Oscillospiraceae |
| Genus | Ruminococcus |
| Species | Ruminococcus sp. YRD2003 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Cocci |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 39 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Genome Summary
Ruminococcus sp. YRD2003
Accession NumberFNZT00000000.1
Gene Summary
Adenine Count
886534 bp
Thymine Count
905752 bp
Guanine Count
874295 bp
Cytosine Count
891534 bp
Genome Length
3560550 bp
Protein-coding Genes
3001 genes
Non-Coding Genes
113 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SAMN02910353_02391 | Not Available | - | 2739594 - 2740397 | 27481.8 |
| transcription-repair coupling factor (superfamily ii helicase) | SAMN02910353_02392 | Not Available | - | 2740551 - 2744018 | 130064.0 |
| peptidyl-trna hydrolase, pth1 family | SAMN02910353_02393 | Not Available | - | 2744031 - 2744657 | 23071.8 |
| diguanylate cyclase (ggdef) domain-containing protein | SAMN02910353_02394 | Not Available | + | 2744935 - 2747955 | 117011.0 |
| uncharacterized membrane protein | SAMN02910353_02395 | Not Available | - | 2748099 - 2748773 | 24790.7 |
| dna-binding transcriptional regulator, arsr family | SAMN02910353_02396 | Not Available | - | 2748763 - 2749041 | 10362.5 |
| glycosyl hydrolases family 43 | SAMN02910353_02397 | Not Available | - | 2749270 - 2751813 | 93284.2 |
| looped-hinge helix dna binding domain-containing protein, abrb family | SAMN02910353_02398 | Not Available | + | 2752216 - 2752422 | 7710.64 |
| wd40-like beta propeller repeat | SAMN02910353_02399 | Not Available | + | 2752648 - 2753961 | 48891.1 |
| muramoyltetrapeptide carboxypeptidase ldca (peptidoglycan recycling) | SAMN02910353_02400 | Not Available | - | 2754552 - 2755673 | 41706.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.