Kingdom
Bacillati
Phylum
Bacillota
Class
Clostridia
Order
Eubacteriales
Family
Oscillospiraceae
Genus
Ruminococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Bacillota |
| Class | Clostridia |
| Order | Eubacteriales |
| Family | Oscillospiraceae |
| Genus | Ruminococcus |
| Species | Ruminococcus sp. YRD2003 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Cocci |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 39 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Genome Summary
Ruminococcus sp. YRD2003
Accession NumberFNZT00000000.1
Gene Summary
Adenine Count
886534 bp
Thymine Count
905752 bp
Guanine Count
874295 bp
Cytosine Count
891534 bp
Genome Length
3560550 bp
Protein-coding Genes
3001 genes
Non-Coding Genes
113 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| glycosyl hydrolase family 48 | SAMN02910353_02360 | Not Available | + | 2704378 - 2706975 | 94785.9 |
| tir domain-containing protein | SAMN02910353_02361 | Not Available | + | 2707108 - 2710527 | 126759.0 |
| hypothetical protein | SAMN02910353_02362 | Not Available | + | 2710524 - 2712482 | 74067.7 |
| Trna-gln | Not Available | Not Available | + | 2712737 - 2712812 | Not Available |
| cna protein b-type domain-containing protein | SAMN02910353_02364 | Not Available | + | 2713160 - 2713777 | 22797.1 |
| site-specific dna recombinase | SAMN02910353_02365 | Not Available | + | 2714019 - 2715398 | 52103.1 |
| toxin toxn, type iii toxin-antitoxin system | SAMN02910353_02366 | Not Available | + | 2715623 - 2716162 | 20715.1 |
| hypothetical protein | SAMN02910353_02367 | Not Available | + | 2716710 - 2717204 | 19432.2 |
| hypothetical protein | SAMN02910353_02368 | Not Available | + | 2717340 - 2717774 | 17663.8 |
| endonuclease v | SAMN02910353_02369 | Not Available | + | 2717808 - 2718512 | 26601.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.