Kingdom
Bacillati
Phylum
Bacillota
Class
Clostridia
Order
Eubacteriales
Family
Oscillospiraceae
Genus
Ruminococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Bacillota |
| Class | Clostridia |
| Order | Eubacteriales |
| Family | Oscillospiraceae |
| Genus | Ruminococcus |
| Species | Ruminococcus sp. YRD2003 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Cocci |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 39 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Genome Summary
Ruminococcus sp. YRD2003
Accession NumberFNZT00000000.1
Gene Summary
Adenine Count
886534 bp
Thymine Count
905752 bp
Guanine Count
874295 bp
Cytosine Count
891534 bp
Genome Length
3560550 bp
Protein-coding Genes
3001 genes
Non-Coding Genes
113 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| carbohydrate binding module (family 35) | SAMN02910353_02350 | Not Available | + | 2692749 - 2695034 | 83168.0 |
| putative acetyltransferase | SAMN02910353_02351 | Not Available | + | 2695153 - 2695602 | 17432.7 |
| phosphopantothenoylcysteine decarboxylase / phosphopantothenate--cysteine ligase | SAMN02910353_02352 | Not Available | + | 2695605 - 2696795 | 43250.6 |
| hypothetical protein | SAMN02910353_02353 | Not Available | - | 2696844 - 2697116 | 10485.4 |
| hypothetical protein | SAMN02910353_02354 | Not Available | - | 2697156 - 2697428 | 10266.2 |
| uncharacterized protein, upf0371 family | SAMN02910353_02355 | Not Available | - | 2697459 - 2698931 | 54928.1 |
| protein of unknown function | SAMN02910353_02356 | Not Available | - | 2699072 - 2700475 | 51027.8 |
| abc-type uncharacterized transport system | SAMN02910353_02357 | Not Available | - | 2700475 - 2702034 | 57844.5 |
| abc-2 type transport system permease protein | SAMN02910353_02358 | Not Available | - | 2702041 - 2702772 | 28091.0 |
| abc-2 type transport system atp-binding protein | SAMN02910353_02359 | Not Available | - | 2702772 - 2703824 | 38811.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.