Kingdom
Bacillati
Phylum
Bacillota
Class
Clostridia
Order
Eubacteriales
Family
Oscillospiraceae
Genus
Ruminococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Bacillota |
| Class | Clostridia |
| Order | Eubacteriales |
| Family | Oscillospiraceae |
| Genus | Ruminococcus |
| Species | Ruminococcus sp. YRD2003 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Cocci |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 39 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Genome Summary
Ruminococcus sp. YRD2003
Accession NumberFNZT00000000.1
Gene Summary
Adenine Count
886534 bp
Thymine Count
905752 bp
Guanine Count
874295 bp
Cytosine Count
891534 bp
Genome Length
3560550 bp
Protein-coding Genes
3001 genes
Non-Coding Genes
113 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| protein n-acetyltransferase, rimj/riml family | SAMN02910353_02297 | Not Available | - | 2626731 - 2627258 | 20184.6 |
| von willebrand factor type a domain-containing protein | SAMN02910353_02298 | Not Available | - | 2627327 - 2628013 | 24984.4 |
| arabinoxylan arabinofuranohydrolase | SAMN02910353_02299 | Not Available | + | 2628532 - 2632377 | 138856.0 |
| 4-hydroxy 2-oxovalerate aldolase | SAMN02910353_02300 | Not Available | + | 2632982 - 2633956 | 36550.5 |
| arabinan endo-1,5-alpha-l-arabinosidase | SAMN02910353_02301 | Not Available | - | 2634016 - 2636775 | 100827.0 |
| hypothetical protein | SAMN02910353_02302 | Not Available | + | 2637025 - 2637396 | 12588.9 |
| ca2+-transporting atpase | SAMN02910353_02303 | Not Available | - | 2637479 - 2640124 | 94158.7 |
| pectate lyase | SAMN02910353_02304 | Not Available | - | 2640226 - 2642772 | 89751.2 |
| ca-activated chloride channel family protein | SAMN02910353_02305 | Not Available | + | 2643161 - 2644750 | 57558.7 |
| trna(ile)-lysidine synthase tils/mesj | SAMN02910353_02306 | Not Available | + | 2645194 - 2645997 | 30848.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.